Wall clock time and date at job start Mon Mar 30 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37808 * 121.56480 * 2 1 4 4 C 1.35134 * 114.76136 * 179.80661 * 3 2 1 5 5 C 1.50703 * 127.24798 * 180.17910 * 4 3 2 6 6 O 1.42901 * 109.46945 * 145.25607 * 5 4 3 7 7 Si 1.63103 * 114.00045 * 263.28250 * 6 5 4 8 8 C 1.86296 * 109.47169 * 55.38992 * 7 6 5 9 9 C 1.86295 * 109.47126 * 175.39132 * 7 6 5 10 10 C 1.86300 * 109.47086 * 295.39089 * 7 6 5 11 11 C 1.50689 * 109.47078 * 265.25524 * 5 4 3 12 12 N 1.27946 * 120.00244 * 344.60517 * 11 5 4 13 13 Si 1.86810 * 119.99975 * 164.60462 * 11 5 4 14 14 H 1.48503 * 109.46657 * 94.53691 * 13 11 5 15 15 H 1.48498 * 109.46894 * 214.53445 * 13 11 5 16 16 H 1.48499 * 109.46973 * 334.54037 * 13 11 5 17 17 S 1.72052 * 105.50533 * 0.41016 * 4 3 2 18 18 N 1.30091 * 121.55506 * 180.28106 * 2 1 3 19 19 H 1.08999 * 109.47323 * 269.74229 * 1 2 3 20 20 H 1.08998 * 109.46969 * 149.73556 * 1 2 3 21 21 H 1.09005 * 109.46839 * 29.74003 * 1 2 3 22 22 H 1.08003 * 122.61742 * 0.02562 * 3 2 1 23 23 H 1.09002 * 109.47073 * 25.25951 * 5 4 3 24 24 H 1.08997 * 109.47586 * 60.00004 * 8 7 6 25 25 H 1.08997 * 109.47338 * 180.02562 * 8 7 6 26 26 H 1.09002 * 109.47111 * 299.99955 * 8 7 6 27 27 H 1.09000 * 109.47492 * 60.00154 * 9 7 6 28 28 H 1.09007 * 109.47327 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.47230 * 299.99561 * 9 7 6 30 30 H 1.09002 * 109.47275 * 58.43075 * 10 7 6 31 31 H 1.09000 * 109.47170 * 178.43625 * 10 7 6 32 32 H 1.09006 * 109.47116 * 298.43088 * 10 7 6 33 33 H 0.97001 * 119.99911 * 0.02562 * 12 11 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2284 1.1742 0.0000 4 6 3.5702 1.0141 0.0041 5 6 4.6180 2.0972 0.0090 6 8 5.7424 1.6688 0.7799 7 14 5.7343 2.2060 2.3199 8 6 4.1407 1.7044 3.1442 9 6 7.1718 1.4640 3.2439 10 6 5.8813 4.0631 2.3306 11 6 5.0563 2.3784 -1.4051 12 7 4.7750 1.5501 -2.3387 13 14 6.0104 3.9365 -1.7949 14 1 7.4663 3.6452 -1.7674 15 1 5.6288 4.4260 -3.1439 16 1 5.6944 4.9765 -0.7831 17 16 3.8305 -0.6866 -0.0040 18 7 2.1878 -1.1085 -0.0054 19 1 -0.3634 -0.0046 1.0276 20 1 -0.3633 -0.8876 -0.5179 21 1 -0.3633 0.8924 -0.5098 22 1 1.7580 2.1464 0.0004 23 1 4.2012 3.0040 0.4474 24 1 4.0546 0.6179 3.1381 25 1 4.1351 2.0638 4.1733 26 1 3.2997 2.1386 2.6036 27 1 8.1042 1.7574 2.7617 28 1 7.1662 1.8226 4.2733 29 1 7.0858 0.3774 3.2378 30 1 5.0554 4.4962 1.7662 31 1 5.8480 4.4243 3.3584 32 1 6.8266 4.3554 1.8732 33 1 4.2793 0.7412 -2.1364 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404420866.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:52 Heat of formation + Delta-G solvation = -27.071754 kcal Electronic energy + Delta-G solvation = -15753.394629 eV Core-core repulsion = 13257.069082 eV Total energy + Delta-G solvation = -2496.325547 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.64836 -39.04543 -36.01795 -32.78945 -30.65879 -29.69312 -28.88159 -28.56790 -27.87692 -24.25885 -21.62185 -20.60777 -19.40544 -17.89798 -17.77099 -17.05398 -15.93917 -15.63753 -15.13368 -14.48019 -14.34958 -14.19393 -13.97180 -13.90493 -13.63387 -13.54299 -13.41691 -13.34421 -13.22694 -13.21791 -13.04029 -12.56290 -12.33688 -12.15458 -11.91138 -11.57923 -11.46482 -10.91762 -10.80243 -10.61935 -10.27671 -9.62494 -0.50116 0.31111 0.60011 0.81403 1.10360 1.25643 1.38306 1.50766 1.68191 1.83516 1.85079 1.90513 2.31093 3.17010 3.59698 3.66263 3.83628 4.03860 4.24978 4.37099 4.50587 4.55461 4.59519 4.59708 4.61445 4.63236 4.64904 4.66933 4.71503 4.96910 5.05976 5.35184 5.43452 5.47998 5.59793 6.69247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.116 3.884 3 C -0.181 4.181 4 C -0.222 4.222 5 C 0.171 3.829 6 O -0.606 6.606 7 Si 1.242 2.758 8 C -0.506 4.506 9 C -0.464 4.464 10 C -0.510 4.510 11 C -0.028 4.028 12 N -0.601 5.601 13 Si 1.061 2.939 14 H -0.237 1.237 15 H -0.242 1.242 16 H -0.242 1.242 17 S 0.295 5.705 18 N -0.458 5.458 19 H 0.085 0.915 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.161 0.839 23 H 0.099 0.901 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 4.348 1.945 4.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C -0.217 4.217 4 C -0.352 4.352 5 C 0.108 3.892 6 O -0.563 6.563 7 Si 1.380 2.620 8 C -0.608 4.608 9 C -0.570 4.570 10 C -0.612 4.612 11 C -0.274 4.274 12 N -0.217 5.217 13 Si 0.872 3.128 14 H -0.160 1.160 15 H -0.164 1.164 16 H -0.164 1.164 17 S 0.450 5.550 18 N -0.281 5.281 19 H 0.104 0.896 20 H 0.100 0.900 21 H 0.102 0.898 22 H 0.179 0.821 23 H 0.117 0.883 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.760 2.772 0.523 2.922 hybrid contribution -1.907 0.649 1.641 2.599 sum -1.147 3.421 2.164 4.207 Atomic orbital electron populations 1.20611 0.86089 1.04286 1.03898 1.21538 0.99381 0.87976 0.97187 1.21178 0.91789 1.01289 1.07396 1.25951 0.98768 1.03174 1.07295 1.20122 0.82574 0.92193 0.94261 1.85494 1.45924 1.79030 1.45862 0.77506 0.66674 0.64214 0.53603 1.26987 1.18738 1.06142 1.08968 1.26254 1.14493 1.07752 1.08547 1.26975 1.05079 1.24007 1.05168 1.32101 0.98496 1.07061 0.89760 1.69306 1.09175 1.06022 1.37241 0.83703 0.78486 0.69488 0.81158 1.15981 1.16434 1.16432 1.84411 1.09701 0.95069 1.65787 1.76718 1.00820 1.26532 1.24020 0.89649 0.90002 0.89806 0.82124 0.88332 0.91130 0.90559 0.91393 0.90479 0.90292 0.90647 0.91176 0.90288 0.90463 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.14 10.27 36.00 0.37 0.51 16 2 C 0.12 0.13 6.72 -83.49 -0.56 -0.43 16 3 C -0.18 0.03 9.91 -40.84 -0.40 -0.37 16 4 C -0.22 -0.15 3.29 -35.41 -0.12 -0.26 16 5 C 0.17 -0.07 2.02 -29.04 -0.06 -0.13 16 6 O -0.61 0.15 7.94 -35.23 -0.28 -0.13 16 7 Si 1.24 -2.58 12.60 -169.99 -2.14 -4.72 16 8 C -0.51 0.59 8.16 101.05 0.82 1.41 16 9 C -0.46 0.64 8.65 101.05 0.87 1.52 16 10 C -0.51 1.20 8.64 101.05 0.87 2.07 16 11 C -0.03 -0.01 5.28 -13.90 -0.07 -0.09 16 12 N -0.60 -1.45 13.36 56.23 0.75 -0.70 16 13 Si 1.06 -1.22 29.97 -169.99 -5.09 -6.32 16 14 H -0.24 0.16 7.11 56.52 0.40 0.56 16 15 H -0.24 0.08 7.11 56.52 0.40 0.48 16 16 H -0.24 0.67 7.11 56.52 0.40 1.08 16 17 S 0.29 0.70 22.52 -107.50 -2.42 -1.72 16 18 N -0.46 -1.59 12.05 32.03 0.39 -1.20 16 19 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 20 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 21 H 0.08 -0.29 8.11 -51.93 -0.42 -0.71 16 22 H 0.16 -0.48 8.06 -52.48 -0.42 -0.90 16 23 H 0.10 -0.34 6.19 -51.93 -0.32 -0.66 16 24 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 25 H 0.08 -0.12 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.09 7.76 -51.93 -0.40 -0.49 16 27 H 0.08 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.08 -0.16 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 30 H 0.07 -0.21 7.34 -51.93 -0.38 -0.59 16 31 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 32 H 0.08 -0.18 7.96 -51.93 -0.41 -0.60 16 33 H 0.33 0.81 6.15 -40.82 -0.25 0.56 16 LS Contribution 298.36 15.07 4.50 4.50 Total: 0.00 -4.32 298.36 -7.31 -11.63 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -4.74 Total: -5.55 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 1.73 Total: 4.22 kcal Atomic # 7 Polarization: -3.04 SS G_CDS: 1.14 Total: -1.90 kcal Atomic # 8 Polarization: 0.15 SS G_CDS: -0.28 Total: -0.13 kcal Atomic # 14 Polarization: -3.81 SS G_CDS: -7.24 Total: -11.04 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.42 Total: -1.72 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -4.32 -7.31 -11.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404420866.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.442 kcal (2) G-P(sol) polarization free energy of solvation -4.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds