Wall clock time and date at job start Mon Mar 30 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37808 * 121.56480 * 2 1 4 4 C 1.35134 * 114.76136 * 179.80661 * 3 2 1 5 5 C 1.50703 * 127.24798 * 180.17910 * 4 3 2 6 6 O 1.42901 * 109.46945 * 145.25607 * 5 4 3 7 7 Si 1.63103 * 114.00045 * 263.28250 * 6 5 4 8 8 C 1.86296 * 109.47169 * 55.38992 * 7 6 5 9 9 C 1.86295 * 109.47126 * 175.39132 * 7 6 5 10 10 C 1.86300 * 109.47086 * 295.39089 * 7 6 5 11 11 C 1.50689 * 109.47078 * 265.25524 * 5 4 3 12 12 N 1.27946 * 120.00244 * 344.60517 * 11 5 4 13 13 Si 1.86810 * 119.99975 * 164.60462 * 11 5 4 14 14 H 1.48503 * 109.46657 * 94.53691 * 13 11 5 15 15 H 1.48498 * 109.46894 * 214.53445 * 13 11 5 16 16 H 1.48499 * 109.46973 * 334.54037 * 13 11 5 17 17 S 1.72052 * 105.50533 * 0.41016 * 4 3 2 18 18 N 1.30091 * 121.55506 * 180.28106 * 2 1 3 19 19 H 1.08999 * 109.47323 * 269.74229 * 1 2 3 20 20 H 1.08998 * 109.46969 * 149.73556 * 1 2 3 21 21 H 1.09005 * 109.46839 * 29.74003 * 1 2 3 22 22 H 1.08003 * 122.61742 * 0.02562 * 3 2 1 23 23 H 1.09002 * 109.47073 * 25.25951 * 5 4 3 24 24 H 1.08997 * 109.47586 * 60.00004 * 8 7 6 25 25 H 1.08997 * 109.47338 * 180.02562 * 8 7 6 26 26 H 1.09002 * 109.47111 * 299.99955 * 8 7 6 27 27 H 1.09000 * 109.47492 * 60.00154 * 9 7 6 28 28 H 1.09007 * 109.47327 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.47230 * 299.99561 * 9 7 6 30 30 H 1.09002 * 109.47275 * 58.43075 * 10 7 6 31 31 H 1.09000 * 109.47170 * 178.43625 * 10 7 6 32 32 H 1.09006 * 109.47116 * 298.43088 * 10 7 6 33 33 H 0.97001 * 119.99911 * 0.02562 * 12 11 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2284 1.1742 0.0000 4 6 3.5702 1.0141 0.0041 5 6 4.6180 2.0972 0.0090 6 8 5.7424 1.6688 0.7799 7 14 5.7343 2.2060 2.3199 8 6 4.1407 1.7044 3.1442 9 6 7.1718 1.4640 3.2439 10 6 5.8813 4.0631 2.3306 11 6 5.0563 2.3784 -1.4051 12 7 4.7750 1.5501 -2.3387 13 14 6.0104 3.9365 -1.7949 14 1 7.4663 3.6452 -1.7674 15 1 5.6288 4.4260 -3.1439 16 1 5.6944 4.9765 -0.7831 17 16 3.8305 -0.6866 -0.0040 18 7 2.1878 -1.1085 -0.0054 19 1 -0.3634 -0.0046 1.0276 20 1 -0.3633 -0.8876 -0.5179 21 1 -0.3633 0.8924 -0.5098 22 1 1.7580 2.1464 0.0004 23 1 4.2012 3.0040 0.4474 24 1 4.0546 0.6179 3.1381 25 1 4.1351 2.0638 4.1733 26 1 3.2997 2.1386 2.6036 27 1 8.1042 1.7574 2.7617 28 1 7.1662 1.8226 4.2733 29 1 7.0858 0.3774 3.2378 30 1 5.0554 4.4962 1.7662 31 1 5.8480 4.4243 3.3584 32 1 6.8266 4.3554 1.8732 33 1 4.2793 0.7412 -2.1364 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404420866.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:52 Heat of formation + Delta-G solvation = -18.373559 kcal Electronic energy + Delta-G solvation = -15753.017447 eV Core-core repulsion = 13257.069082 eV Total energy + Delta-G solvation = -2495.948365 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.073 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65203 -39.02618 -36.02220 -32.80510 -30.62045 -29.53035 -28.76169 -28.40068 -27.80927 -24.24958 -21.62180 -20.60602 -19.44257 -17.87372 -17.71166 -17.02653 -15.85825 -15.64395 -15.09555 -14.35090 -14.25667 -14.07495 -13.87620 -13.80711 -13.52198 -13.40714 -13.29276 -13.24893 -13.08400 -13.07098 -12.99313 -12.50108 -12.27115 -11.99803 -11.83038 -11.57463 -11.54049 -10.88033 -10.73197 -10.50796 -10.27723 -9.70648 -0.53153 0.27617 0.61927 0.75304 1.17327 1.27424 1.50289 1.64386 1.82686 1.94148 2.03830 2.05389 2.45263 3.19887 3.61304 3.80983 3.87881 4.07898 4.34683 4.44919 4.64591 4.67267 4.69124 4.71808 4.74616 4.76752 4.77894 4.85476 4.87894 5.09050 5.18210 5.49245 5.58374 5.59270 5.68028 6.65159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.113 3.887 3 C -0.179 4.179 4 C -0.213 4.213 5 C 0.161 3.839 6 O -0.621 6.621 7 Si 1.271 2.729 8 C -0.513 4.513 9 C -0.479 4.479 10 C -0.511 4.511 11 C -0.026 4.026 12 N -0.634 5.634 13 Si 1.074 2.926 14 H -0.248 1.248 15 H -0.258 1.258 16 H -0.202 1.202 17 S 0.244 5.756 18 N -0.495 5.495 19 H 0.096 0.904 20 H 0.073 0.927 21 H 0.108 0.892 22 H 0.195 0.805 23 H 0.137 0.863 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 6.677 2.509 7.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.064 4.064 3 C -0.214 4.214 4 C -0.343 4.343 5 C 0.099 3.901 6 O -0.578 6.578 7 Si 1.409 2.591 8 C -0.615 4.615 9 C -0.585 4.585 10 C -0.615 4.615 11 C -0.271 4.271 12 N -0.249 5.249 13 Si 0.883 3.117 14 H -0.172 1.172 15 H -0.182 1.182 16 H -0.123 1.123 17 S 0.400 5.600 18 N -0.317 5.317 19 H 0.114 0.886 20 H 0.092 0.908 21 H 0.127 0.873 22 H 0.213 0.787 23 H 0.154 0.846 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.129 5.074 1.117 5.198 hybrid contribution -1.718 -0.088 1.470 2.263 sum -1.589 4.986 2.587 5.838 Atomic orbital electron populations 1.20748 0.84216 1.05128 1.04767 1.22138 1.00705 0.87946 0.95601 1.21525 0.91415 1.02230 1.06233 1.26147 0.99513 1.01881 1.06740 1.20424 0.82405 0.93093 0.94182 1.85488 1.46049 1.79583 1.46663 0.77007 0.65184 0.64613 0.52334 1.27104 1.19794 1.04983 1.09605 1.26441 1.15388 1.07240 1.09399 1.26931 1.05899 1.22779 1.05913 1.32664 0.97304 1.07064 0.90021 1.69367 1.10695 1.06555 1.38331 0.83645 0.77335 0.69311 0.81371 1.17154 1.18202 1.12330 1.84468 1.10320 0.97701 1.67507 1.76756 1.01038 1.27987 1.25947 0.88605 0.90795 0.87334 0.78749 0.84563 0.92915 0.90114 0.90836 0.90524 0.89653 0.91762 0.89803 0.89764 0.90056 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.33 10.27 71.24 0.73 1.06 16 2 C 0.11 0.28 6.72 42.71 0.29 0.57 16 3 C -0.18 0.22 9.91 21.45 0.21 0.43 16 4 C -0.21 -0.28 3.29 24.97 0.08 -0.20 16 5 C 0.16 -0.29 2.02 29.10 0.06 -0.23 16 6 O -0.62 0.45 7.94 -148.98 -1.18 -0.73 16 7 Si 1.27 -6.20 12.60 68.60 0.86 -5.34 16 8 C -0.51 1.37 8.16 113.37 0.93 2.30 16 9 C -0.48 1.09 8.65 113.37 0.98 2.07 16 10 C -0.51 3.70 8.64 113.37 0.98 4.68 16 11 C -0.03 -0.01 5.28 88.67 0.47 0.45 16 12 N -0.63 -3.59 13.36 24.10 0.32 -3.27 16 13 Si 1.07 -3.78 29.97 68.60 2.06 -1.72 16 14 H -0.25 0.42 7.11 99.48 0.71 1.13 16 15 H -0.26 0.21 7.11 99.48 0.71 0.92 16 16 H -0.20 1.90 7.11 99.48 0.71 2.61 16 17 S 0.24 1.64 22.52 -56.49 -1.27 0.37 16 18 N -0.49 -4.25 12.05 -52.57 -0.63 -4.88 16 19 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 20 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 21 H 0.11 -0.95 8.11 -2.38 -0.02 -0.97 16 22 H 0.20 -1.70 8.06 -2.91 -0.02 -1.73 16 23 H 0.14 -1.33 6.19 -2.39 -0.01 -1.35 16 24 H 0.05 0.06 7.96 -2.39 -0.02 0.04 16 25 H 0.08 -0.31 7.96 -2.39 -0.02 -0.32 16 26 H 0.07 -0.29 7.76 -2.39 -0.02 -0.31 16 27 H 0.08 -0.18 7.96 -2.39 -0.02 -0.20 16 28 H 0.08 -0.34 7.96 -2.38 -0.02 -0.36 16 29 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 30 H 0.08 -0.81 7.34 -2.39 -0.02 -0.83 16 31 H 0.08 -0.65 7.96 -2.39 -0.02 -0.66 16 32 H 0.08 -0.60 7.96 -2.38 -0.02 -0.62 16 33 H 0.32 2.08 6.15 -92.71 -0.57 1.51 16 Total: 0.00 -12.50 298.36 6.16 -6.34 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: 1.28 Total: -1.89 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 4.73 Total: 11.13 kcal Atomic # 7 Polarization: -7.84 SS G_CDS: -0.31 Total: -8.15 kcal Atomic # 8 Polarization: 0.45 SS G_CDS: -1.18 Total: -0.73 kcal Atomic # 14 Polarization: -9.98 SS G_CDS: 2.92 Total: -7.06 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.27 Total: 0.37 kcal Total: -12.50 6.16 -6.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404420866.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.036 kcal (2) G-P(sol) polarization free energy of solvation -12.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds