Wall clock time and date at job start Mon Mar 30 2020 06:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99628 * 2 1 4 4 H 1.48500 * 109.47334 * 239.99916 * 3 2 1 5 5 H 1.48497 * 109.47604 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46876 * 120.00353 * 3 2 1 7 7 C 1.37875 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99651 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00156 * 359.97438 * 7 2 1 10 10 O 1.42906 * 109.47108 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00085 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47245 * 180.02562 * 11 10 9 13 13 S 1.81394 * 109.47090 * 180.02562 * 12 11 10 14 14 C 1.76198 * 103.00197 * 179.97438 * 13 12 11 15 15 N 1.32433 * 119.72064 * 359.97438 * 14 13 12 16 16 C 1.31974 * 121.64031 * 179.97438 * 15 14 13 17 17 C 1.38029 * 120.90298 * 0.02931 * 16 15 14 18 18 C 1.38889 * 119.35350 * 359.96980 * 17 16 15 19 19 C 1.38448 * 118.49666 * 0.02562 * 18 17 16 20 20 F 1.35098 * 120.47949 * 180.02562 * 19 18 17 21 21 H 0.97001 * 120.00569 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47450 * 60.00491 * 9 7 2 23 23 H 1.09005 * 109.47017 * 299.99756 * 9 7 2 24 24 H 1.09002 * 109.47157 * 59.99786 * 11 10 9 25 25 H 1.09007 * 109.47008 * 300.00163 * 11 10 9 26 26 H 1.09002 * 109.47370 * 59.99730 * 12 11 10 27 27 H 1.09003 * 109.46624 * 299.99846 * 12 11 10 28 28 H 1.07999 * 119.54576 * 180.02562 * 16 15 14 29 29 H 1.08002 * 120.32211 * 180.02562 * 17 16 15 30 30 H 1.08009 * 120.75090 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9562 0.0006 13 16 1.8681 -7.5938 0.0006 14 6 3.2476 -8.6900 0.0006 15 7 4.4771 -8.1980 0.0000 16 6 5.5373 -8.9840 0.0005 17 6 5.4014 -10.3576 0.0009 18 6 4.1297 -10.9159 0.0015 19 6 3.0357 -10.0674 0.0011 20 9 1.7807 -10.5674 0.0022 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 0.9448 -4.9827 -0.8897 25 1 0.9453 -4.9822 0.8903 26 1 3.2683 -5.8487 0.8906 27 1 3.2683 -5.8495 -0.8894 28 1 6.5247 -8.5464 0.0004 29 1 6.2755 -10.9920 0.0017 30 1 3.9972 -11.9879 0.0023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451052885.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:49 Heat of formation + Delta-G solvation = -63.285751 kcal Electronic energy + Delta-G solvation = -15541.918718 eV Core-core repulsion = 12571.011801 eV Total energy + Delta-G solvation = -2970.906917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.20722 -40.13970 -36.88943 -32.95353 -32.81666 -31.19629 -30.92033 -27.04193 -24.49961 -23.94911 -22.56545 -22.16152 -18.40821 -17.68835 -17.43740 -16.41185 -16.16560 -16.06735 -15.42223 -15.33724 -14.51868 -14.26295 -13.93079 -13.61506 -13.53360 -13.24319 -13.04408 -12.55571 -11.99542 -11.24886 -10.99537 -10.83655 -10.77756 -10.47893 -10.41081 -10.09957 -9.97570 -9.76065 -9.16178 -8.89128 -8.23790 -7.71434 -6.12810 -4.15234 0.48949 0.70417 1.19680 2.14927 3.20298 3.31860 3.34430 3.38406 3.70072 4.15063 4.32164 4.34084 4.54608 4.79465 4.88301 5.20539 5.22491 5.23568 5.44175 5.56348 5.61987 5.77478 6.08758 6.15371 6.18515 7.04625 7.32745 7.38015 7.76134 8.10410 8.49052 8.96633 9.49493 10.98641 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.047887 B = 0.003368 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.571681 B = 8311.071951 C = 8869.895098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.067 0.933 9 C 0.196 3.804 10 O -0.391 6.391 11 C 0.078 3.922 12 C -0.094 4.094 13 S -0.046 6.046 14 C 0.095 3.905 15 N -0.463 5.463 16 C 0.108 3.892 17 C -0.158 4.158 18 C -0.092 4.092 19 C 0.062 3.938 20 F -0.121 7.121 21 H 0.265 0.735 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.167 0.833 29 H 0.147 0.853 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.438 -22.482 0.003 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.122 3.878 10 O -0.311 6.311 11 C -0.002 4.002 12 C -0.242 4.242 13 S 0.197 5.803 14 C -0.155 4.155 15 N -0.175 5.175 16 C -0.052 4.052 17 C -0.181 4.181 18 C -0.120 4.120 19 C 0.033 3.967 20 F -0.099 7.099 21 H 0.075 0.925 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.184 0.816 29 H 0.164 0.836 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.284 -21.536 0.003 22.734 hybrid contribution 1.138 0.056 0.001 1.139 sum 8.422 -21.480 0.004 23.072 Atomic orbital electron populations 1.69951 1.06120 1.27387 1.50235 1.24952 0.95001 0.99460 0.95026 0.86362 0.79293 0.81751 0.78882 1.19959 1.21114 1.19966 1.21009 0.94100 0.89233 1.51283 0.91483 1.20263 0.88728 0.83163 0.95693 1.87861 1.35612 1.12319 1.95294 1.21814 0.92974 0.84972 1.00394 1.23446 1.01812 0.91173 1.07793 1.85682 1.05313 0.99575 1.89723 1.23403 0.97565 0.93223 1.01304 1.68228 0.97104 1.38809 1.13358 1.22883 0.97618 0.90507 0.94205 1.22014 0.97450 0.96479 1.02204 1.21551 0.91377 1.00806 0.98262 1.18072 0.80816 0.91120 1.06707 1.91545 1.37305 1.87335 1.93717 0.92507 0.97411 0.97426 0.93445 0.93453 0.88182 0.88187 0.81552 0.83567 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.52 -15.38 9.43 -34.44 -0.32 -15.71 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.20 5.44 5.69 36.00 0.20 5.64 16 10 O -0.39 -9.59 10.33 -35.23 -0.36 -9.96 16 11 C 0.08 1.49 5.95 37.16 0.22 1.71 16 12 C -0.09 -1.53 5.57 37.16 0.21 -1.32 16 13 S -0.05 -0.66 21.52 -107.50 -2.31 -2.97 16 14 C 0.10 1.27 7.00 -16.88 -0.12 1.15 16 15 N -0.46 -5.97 9.43 -12.07 -0.11 -6.08 16 16 C 0.11 0.98 11.17 -17.57 -0.20 0.79 16 17 C -0.16 -1.10 10.10 -39.42 -0.40 -1.50 16 18 C -0.09 -0.75 10.15 -39.26 -0.40 -1.15 16 19 C 0.06 0.71 7.31 -39.09 -0.29 0.42 16 20 F -0.12 -1.46 16.78 2.25 0.04 -1.42 16 21 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 27 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 28 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 29 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 30 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 289.19 15.07 4.36 4.36 Total: -1.00 -32.37 289.19 -7.22 -39.59 By element: Atomic # 1 Polarization: -2.40 SS G_CDS: -3.35 Total: -5.75 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.19 Total: -8.39 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.62 Total: -32.32 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.36 Total: -9.96 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -2.31 Total: -2.97 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.37 -7.22 -39.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451052885.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.697 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds