Wall clock time and date at job start Mon Mar 30 2020 06:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99628 * 2 1 4 4 H 1.48500 * 109.47334 * 239.99916 * 3 2 1 5 5 H 1.48497 * 109.47604 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46876 * 120.00353 * 3 2 1 7 7 C 1.37875 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99651 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00156 * 359.97438 * 7 2 1 10 10 O 1.42906 * 109.47108 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00085 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47245 * 180.02562 * 11 10 9 13 13 S 1.81394 * 109.47090 * 180.02562 * 12 11 10 14 14 C 1.76198 * 103.00197 * 179.97438 * 13 12 11 15 15 N 1.32433 * 119.72064 * 359.97438 * 14 13 12 16 16 C 1.31974 * 121.64031 * 179.97438 * 15 14 13 17 17 C 1.38029 * 120.90298 * 0.02931 * 16 15 14 18 18 C 1.38889 * 119.35350 * 359.96980 * 17 16 15 19 19 C 1.38448 * 118.49666 * 0.02562 * 18 17 16 20 20 F 1.35098 * 120.47949 * 180.02562 * 19 18 17 21 21 H 0.97001 * 120.00569 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47450 * 60.00491 * 9 7 2 23 23 H 1.09005 * 109.47017 * 299.99756 * 9 7 2 24 24 H 1.09002 * 109.47157 * 59.99786 * 11 10 9 25 25 H 1.09007 * 109.47008 * 300.00163 * 11 10 9 26 26 H 1.09002 * 109.47370 * 59.99730 * 12 11 10 27 27 H 1.09003 * 109.46624 * 299.99846 * 12 11 10 28 28 H 1.07999 * 119.54576 * 180.02562 * 16 15 14 29 29 H 1.08002 * 120.32211 * 180.02562 * 17 16 15 30 30 H 1.08009 * 120.75090 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9562 0.0006 13 16 1.8681 -7.5938 0.0006 14 6 3.2476 -8.6900 0.0006 15 7 4.4771 -8.1980 0.0000 16 6 5.5373 -8.9840 0.0005 17 6 5.4014 -10.3576 0.0009 18 6 4.1297 -10.9159 0.0015 19 6 3.0357 -10.0674 0.0011 20 9 1.7807 -10.5674 0.0022 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 0.9448 -4.9827 -0.8897 25 1 0.9453 -4.9822 0.8903 26 1 3.2683 -5.8487 0.8906 27 1 3.2683 -5.8495 -0.8894 28 1 6.5247 -8.5464 0.0004 29 1 6.2755 -10.9920 0.0017 30 1 3.9972 -11.9879 0.0023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451052885.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:49 Heat of formation + Delta-G solvation = -84.157203 kcal Electronic energy + Delta-G solvation = -15542.823772 eV Core-core repulsion = 12571.011801 eV Total energy + Delta-G solvation = -2971.811971 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.08032 -40.90988 -38.80094 -35.05479 -33.65242 -32.54061 -31.96169 -29.20357 -25.30347 -24.92615 -24.52446 -23.68308 -19.30730 -18.64024 -18.50225 -18.23841 -17.71464 -17.20214 -16.93229 -16.57392 -16.25061 -15.28213 -15.05605 -14.97329 -14.67530 -14.54896 -14.22052 -13.84761 -13.38078 -13.04483 -12.94125 -12.62318 -12.58231 -12.06768 -11.67867 -11.34170 -11.23519 -10.93206 -10.77151 -10.61900 -10.35507 -8.76813 -8.34618 -6.48205 -0.28321 -0.00167 0.12371 0.99432 1.39964 1.45002 1.53593 2.33942 2.46802 2.90790 2.99218 3.15080 3.43116 3.64968 3.77557 3.93603 3.96094 4.23420 4.27335 4.55570 4.57177 4.66765 4.83636 4.84422 4.94710 5.10814 5.50571 5.51123 5.89858 6.42156 6.56134 6.72924 7.23367 8.77615 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.047887 B = 0.003368 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.571681 B = 8311.071951 C = 8869.895098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.987 3.013 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.064 0.936 9 C 0.208 3.792 10 O -0.405 6.405 11 C 0.073 3.927 12 C -0.078 4.078 13 S -0.063 6.063 14 C 0.067 3.933 15 N -0.495 5.495 16 C 0.098 3.902 17 C -0.131 4.131 18 C -0.084 4.084 19 C 0.046 3.954 20 F -0.130 7.130 21 H 0.272 0.728 22 H -0.009 1.009 23 H -0.009 1.009 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.195 0.805 29 H 0.194 0.806 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.724 -23.732 0.003 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.082 0.918 9 C 0.133 3.867 10 O -0.325 6.325 11 C -0.005 4.005 12 C -0.226 4.226 13 S 0.178 5.822 14 C -0.182 4.182 15 N -0.208 5.208 16 C -0.063 4.063 17 C -0.153 4.153 18 C -0.112 4.112 19 C 0.017 3.983 20 F -0.109 7.109 21 H 0.081 0.919 22 H 0.009 0.991 23 H 0.008 0.992 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.212 0.788 29 H 0.211 0.789 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.573 -22.820 0.003 24.747 hybrid contribution 0.533 0.220 0.001 0.577 sum 10.107 -22.601 0.005 24.757 Atomic orbital electron populations 1.70060 1.07816 1.28912 1.50083 1.25998 0.96006 1.03478 0.93682 0.85186 0.78069 0.76407 0.79462 1.18899 1.19872 1.18912 1.21363 0.94262 0.90671 1.52911 0.91770 1.19919 0.88606 0.84193 0.93970 1.87803 1.35629 1.13743 1.95325 1.22028 0.94198 0.83431 1.00876 1.23110 1.00571 0.91719 1.07239 1.85547 1.07018 0.98552 1.91037 1.23206 0.97312 0.93359 1.04315 1.68138 0.97710 1.40483 1.14423 1.23522 0.97655 0.91715 0.93401 1.22545 0.98503 0.95948 0.98312 1.22040 0.90567 1.02157 0.96420 1.18375 0.81475 0.90874 1.07541 1.91517 1.38168 1.87295 1.93930 0.91880 0.99136 0.99154 0.92918 0.92929 0.88688 0.88695 0.78832 0.78874 0.79650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.99 44.62 29.54 68.60 2.03 46.65 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.55 -33.65 9.43 25.60 0.24 -33.41 16 8 H 0.06 3.83 7.81 -2.91 -0.02 3.80 16 9 C 0.21 12.03 5.69 71.23 0.41 12.44 16 10 O -0.40 -20.65 10.33 -148.98 -1.54 -22.19 16 11 C 0.07 2.93 5.95 71.98 0.43 3.35 16 12 C -0.08 -2.64 5.57 71.98 0.40 -2.24 16 13 S -0.06 -1.89 21.52 -56.49 -1.22 -3.11 16 14 C 0.07 1.78 7.00 84.87 0.59 2.37 16 15 N -0.49 -12.39 9.43 -192.10 -1.81 -14.20 16 16 C 0.10 1.50 11.17 84.62 0.95 2.45 16 17 C -0.13 -1.23 10.10 22.38 0.23 -1.01 16 18 C -0.08 -1.07 10.15 22.48 0.23 -0.85 16 19 C 0.05 1.01 7.31 22.59 0.17 1.17 16 20 F -0.13 -3.11 16.78 44.97 0.75 -2.36 16 21 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 22 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 23 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 29 H 0.19 0.06 8.06 -2.91 -0.02 0.04 16 30 H 0.19 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -72.13 289.19 3.74 -68.40 By element: Atomic # 1 Polarization: -3.31 SS G_CDS: 1.14 Total: -2.16 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 4.10 Total: -14.84 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.53 Total: -70.39 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -1.54 Total: -22.19 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.75 Total: -2.36 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -1.22 Total: -3.11 kcal Total: -72.13 3.74 -68.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451052885.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.761 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds