Wall clock time and date at job start Mon Mar 30 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39389 * 120.23529 * 80.55729 * 3 2 1 5 5 C 1.38063 * 120.01129 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.75027 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47410 * 89.99562 * 6 5 4 8 8 H 1.08002 * 120.00051 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99898 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00510 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99912 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46887 * 90.00383 * 11 9 7 13 13 H 1.48504 * 109.46953 * 210.00286 * 11 9 7 14 14 H 1.48502 * 109.47222 * 330.00120 * 11 9 7 15 15 C 1.38548 * 120.50140 * 359.97196 * 5 4 3 16 16 C 1.37960 * 120.47241 * 0.02562 * 15 5 4 17 17 C 1.39666 * 119.97514 * 359.76493 * 16 15 5 18 18 C 1.47012 * 120.24795 * 180.25172 * 17 16 15 19 19 C 1.34973 * 120.00139 * 0.23802 * 18 17 16 20 20 C 1.46312 * 120.00457 * 180.02562 * 19 18 17 21 21 O 1.21613 * 119.99836 * 359.97438 * 20 19 18 22 22 O 1.34897 * 120.00091 * 179.97438 * 20 19 18 23 23 H 1.07997 * 119.99626 * 359.97008 * 4 3 2 24 24 H 1.09007 * 109.46939 * 209.99592 * 6 5 4 25 25 H 1.09004 * 109.47004 * 329.99253 * 6 5 4 26 26 H 0.97000 * 120.00469 * 179.97438 * 10 9 7 27 27 H 1.08003 * 119.76127 * 179.97438 * 15 5 4 28 28 H 1.08010 * 120.01009 * 179.97438 * 16 15 5 29 29 H 1.08003 * 120.00126 * 180.23265 * 18 17 16 30 30 H 1.08003 * 119.99735 * 359.97438 * 19 18 17 31 31 H 0.96706 * 116.99970 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -0.1966 -1.1880 5 6 4.6506 -0.1956 -1.1825 6 6 5.4036 -0.4101 -2.4702 7 6 5.6545 0.9199 -3.1329 8 1 5.3033 1.8295 -2.6684 9 6 6.3322 0.9755 -4.3323 10 7 6.7594 -0.1321 -4.8983 11 14 6.6426 2.6241 -5.1542 12 1 7.9373 3.1768 -4.6815 13 1 6.6905 2.4416 -6.6272 14 1 5.5467 3.5643 -4.8073 15 6 5.3490 0.0010 -0.0023 16 6 4.6748 0.1982 1.1851 17 6 3.2783 0.2054 1.2017 18 6 2.5538 0.4205 2.4627 19 6 3.2383 0.6169 3.6093 20 6 2.5173 0.8304 4.8644 21 8 1.3012 0.8315 4.8745 22 8 3.2014 1.0261 6.0104 23 1 2.7338 -0.3511 -2.1126 24 1 6.3562 -0.8955 -2.2576 25 1 4.8143 -1.0418 -3.1349 26 1 7.2359 -0.0930 -5.7423 27 1 6.4290 -0.0009 -0.0117 28 1 5.2269 0.3504 2.1009 29 1 1.4738 0.4216 2.4716 30 1 4.3183 0.6155 3.6005 31 1 2.6815 1.1625 6.8143 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514270476.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:53 Heat of formation + Delta-G solvation = -35.270164 kcal Electronic energy + Delta-G solvation = -16988.931021 eV Core-core repulsion = 14007.255305 eV Total energy + Delta-G solvation = -2981.675716 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.25802 -39.42464 -36.38452 -36.30731 -34.82437 -33.05866 -31.35054 -30.66744 -27.59052 -25.03309 -23.60876 -22.94536 -21.59063 -19.49056 -18.54138 -17.70087 -16.90315 -16.46949 -15.68885 -15.62032 -15.25783 -14.68790 -14.09359 -13.96821 -13.62730 -13.18712 -12.96498 -12.72601 -12.65923 -12.25392 -12.06187 -11.76594 -11.47323 -11.45863 -11.02729 -10.81688 -10.73340 -10.61753 -10.39512 -9.80051 -9.52533 -8.77794 -8.57268 -7.98809 -6.19864 -4.25509 0.23176 1.19816 1.87745 2.74264 2.89915 2.93077 3.14654 3.22211 3.29812 3.33336 3.97065 4.12654 4.34438 4.64303 4.71072 5.06345 5.14509 5.16172 5.35158 5.51554 5.66989 5.88228 5.96190 6.00588 6.21634 6.28980 6.50489 6.60408 6.73599 7.07950 7.32814 7.48040 7.57247 7.73222 7.74687 8.08971 8.79493 9.40115 10.89702 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.026948 B = 0.004153 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.806163 B = 6740.277342 C = 7219.369412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.260 3.740 3 C -0.005 4.005 4 C -0.076 4.076 5 C -0.010 4.010 6 C 0.043 3.957 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.062 3.938 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.272 1.272 15 C -0.098 4.098 16 C -0.090 4.090 17 C -0.076 4.076 18 C 0.012 3.988 19 C -0.211 4.211 20 C 0.516 3.484 21 O -0.525 6.525 22 O -0.515 6.515 23 H 0.136 0.864 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.264 0.736 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.146 0.854 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 0.173 15.009 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.055 4.055 3 C -0.009 4.009 4 C -0.097 4.097 5 C -0.010 4.010 6 C 0.006 3.994 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.141 4.141 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.197 1.197 15 C -0.117 4.117 16 C -0.108 4.108 17 C -0.079 4.079 18 C -0.007 4.007 19 C -0.229 4.229 20 C 0.363 3.637 21 O -0.416 6.416 22 O -0.326 6.326 23 H 0.154 0.846 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.164 0.836 31 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.760 0.041 14.491 14.971 hybrid contribution 0.312 1.012 -0.021 1.060 sum -3.448 1.054 14.470 14.913 Atomic orbital electron populations 1.81215 1.12022 1.08990 1.07670 1.25741 0.92743 0.93608 0.93439 1.16134 0.83820 1.06243 0.94657 1.21174 0.94375 0.98149 0.95969 1.20923 0.92851 0.89708 0.97529 1.18500 0.95277 0.98124 0.87501 1.20999 1.36995 0.91982 1.05833 0.92171 1.24993 0.95337 0.96729 0.96995 1.69936 1.37847 1.26757 1.18314 0.86515 0.78809 0.83692 0.78602 1.20451 1.21093 1.19703 1.21351 1.01017 0.97949 0.91382 1.21316 0.92078 0.98599 0.98843 1.18531 0.93316 1.05321 0.90689 1.22448 1.00081 0.87465 0.90719 1.22048 1.01180 1.10578 0.89126 1.21034 0.85608 0.72521 0.84584 1.90939 1.15389 1.48135 1.87179 1.84644 1.44876 1.84084 1.18987 0.84608 0.94479 0.94634 0.92595 0.84737 0.84919 0.85136 0.83603 0.73158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.20 18.54 41.83 0.78 -6.42 16 2 C 0.26 4.02 13.95 -22.47 -0.31 3.71 16 3 C -0.01 -0.08 5.77 -106.46 -0.61 -0.69 16 4 C -0.08 -1.22 9.38 -39.22 -0.37 -1.59 16 5 C -0.01 -0.17 5.07 -104.57 -0.53 -0.70 16 6 C 0.04 0.94 5.09 -29.04 -0.15 0.79 16 7 C -0.52 -13.01 9.09 -34.44 -0.31 -13.32 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -24.37 13.29 55.43 0.74 -23.63 16 11 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 13 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 C -0.10 -1.44 9.66 -39.57 -0.38 -1.82 16 16 C -0.09 -1.10 9.40 -39.15 -0.37 -1.47 16 17 C -0.08 -0.99 5.90 -104.73 -0.62 -1.61 16 18 C 0.01 0.14 9.01 -37.19 -0.34 -0.19 16 19 C -0.21 -2.26 9.54 -37.50 -0.36 -2.62 16 20 C 0.52 5.97 8.26 33.98 0.28 6.25 16 21 O -0.53 -7.79 17.02 -19.35 -0.33 -8.12 16 22 O -0.51 -4.40 13.44 -41.03 -0.55 -4.95 16 23 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 24 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 25 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.13 1.84 8.06 -52.48 -0.42 1.41 16 28 H 0.13 1.19 6.17 -52.48 -0.32 0.87 16 29 H 0.13 1.76 6.67 -52.48 -0.35 1.41 16 30 H 0.15 1.23 6.08 -52.48 -0.32 0.92 16 31 H 0.41 1.70 9.11 45.56 0.42 2.11 16 LS Contribution 295.09 15.07 4.45 4.45 Total: -1.00 -29.95 295.09 -5.91 -35.86 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -1.80 Total: -0.50 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -4.16 Total: -11.76 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 1.51 Total: -30.05 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.88 Total: -13.07 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.95 -5.91 -35.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514270476.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.592 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds