Wall clock time and date at job start Mon Mar 30 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39389 * 120.23529 * 80.55729 * 3 2 1 5 5 C 1.38063 * 120.01129 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.75027 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47410 * 89.99562 * 6 5 4 8 8 H 1.08002 * 120.00051 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99898 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00510 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99912 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46887 * 90.00383 * 11 9 7 13 13 H 1.48504 * 109.46953 * 210.00286 * 11 9 7 14 14 H 1.48502 * 109.47222 * 330.00120 * 11 9 7 15 15 C 1.38548 * 120.50140 * 359.97196 * 5 4 3 16 16 C 1.37960 * 120.47241 * 0.02562 * 15 5 4 17 17 C 1.39666 * 119.97514 * 359.76493 * 16 15 5 18 18 C 1.47012 * 120.24795 * 180.25172 * 17 16 15 19 19 C 1.34973 * 120.00139 * 0.23802 * 18 17 16 20 20 C 1.46312 * 120.00457 * 180.02562 * 19 18 17 21 21 O 1.21613 * 119.99836 * 359.97438 * 20 19 18 22 22 O 1.34897 * 120.00091 * 179.97438 * 20 19 18 23 23 H 1.07997 * 119.99626 * 359.97008 * 4 3 2 24 24 H 1.09007 * 109.46939 * 209.99592 * 6 5 4 25 25 H 1.09004 * 109.47004 * 329.99253 * 6 5 4 26 26 H 0.97000 * 120.00469 * 179.97438 * 10 9 7 27 27 H 1.08003 * 119.76127 * 179.97438 * 15 5 4 28 28 H 1.08010 * 120.01009 * 179.97438 * 16 15 5 29 29 H 1.08003 * 120.00126 * 180.23265 * 18 17 16 30 30 H 1.08003 * 119.99735 * 359.97438 * 19 18 17 31 31 H 0.96706 * 116.99970 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -0.1966 -1.1880 5 6 4.6506 -0.1956 -1.1825 6 6 5.4036 -0.4101 -2.4702 7 6 5.6545 0.9199 -3.1329 8 1 5.3033 1.8295 -2.6684 9 6 6.3322 0.9755 -4.3323 10 7 6.7594 -0.1321 -4.8983 11 14 6.6426 2.6241 -5.1542 12 1 7.9373 3.1768 -4.6815 13 1 6.6905 2.4416 -6.6272 14 1 5.5467 3.5643 -4.8073 15 6 5.3490 0.0010 -0.0023 16 6 4.6748 0.1982 1.1851 17 6 3.2783 0.2054 1.2017 18 6 2.5538 0.4205 2.4627 19 6 3.2383 0.6169 3.6093 20 6 2.5173 0.8304 4.8644 21 8 1.3012 0.8315 4.8745 22 8 3.2014 1.0261 6.0104 23 1 2.7338 -0.3511 -2.1126 24 1 6.3562 -0.8955 -2.2576 25 1 4.8143 -1.0418 -3.1349 26 1 7.2359 -0.0930 -5.7423 27 1 6.4290 -0.0009 -0.0117 28 1 5.2269 0.3504 2.1009 29 1 1.4738 0.4216 2.4716 30 1 4.3183 0.6155 3.6005 31 1 2.6815 1.1625 6.8143 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514270476.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:53 Heat of formation + Delta-G solvation = -52.569455 kcal Electronic energy + Delta-G solvation = -16989.681174 eV Core-core repulsion = 14007.255305 eV Total energy + Delta-G solvation = -2982.425870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.18218 -40.56348 -37.66991 -37.14460 -36.09551 -34.71930 -32.63185 -31.93671 -29.06953 -26.34996 -24.88131 -24.27811 -22.78973 -20.45204 -19.50951 -18.85819 -18.40824 -17.88149 -16.76468 -16.57693 -16.46116 -16.32583 -15.26033 -15.20824 -14.53240 -14.49123 -14.36721 -14.18689 -14.04017 -13.49999 -13.27733 -13.15018 -12.91910 -12.59396 -12.53500 -12.38977 -12.05693 -11.74672 -11.74250 -11.47400 -11.09212 -10.55024 -9.91388 -9.19522 -8.15984 -6.27752 -0.80349 0.06300 0.80530 1.45087 1.47039 1.50057 1.56520 1.91519 1.98329 2.14595 2.44781 2.76780 2.98308 3.17160 3.63477 3.73215 4.06324 4.24889 4.28191 4.40294 4.47686 4.73790 4.89079 4.95533 5.21675 5.28269 5.40681 5.43456 5.44753 5.59560 5.79651 5.87486 5.93834 6.20663 6.33001 6.86045 6.98650 7.41334 8.92890 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.026948 B = 0.004153 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.806163 B = 6740.277342 C = 7219.369412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.276 3.724 3 C -0.014 4.014 4 C -0.079 4.079 5 C -0.040 4.040 6 C 0.050 3.950 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.009 3.991 10 N -0.928 5.928 11 Si 0.957 3.043 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.268 1.268 15 C -0.090 4.090 16 C -0.075 4.075 17 C -0.053 4.053 18 C -0.009 4.009 19 C -0.180 4.180 20 C 0.518 3.482 21 O -0.563 6.563 22 O -0.503 6.503 23 H 0.126 0.874 24 H 0.021 0.979 25 H 0.009 0.991 26 H 0.264 0.736 27 H 0.145 0.855 28 H 0.179 0.821 29 H 0.114 0.886 30 H 0.180 0.820 31 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 1.359 17.666 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.038 4.038 3 C -0.018 4.018 4 C -0.099 4.099 5 C -0.040 4.040 6 C 0.013 3.987 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.189 4.189 10 N -0.568 5.568 11 Si 0.782 3.218 12 H -0.196 1.196 13 H -0.213 1.213 14 H -0.192 1.192 15 C -0.109 4.109 16 C -0.092 4.092 17 C -0.056 4.056 18 C -0.028 4.028 19 C -0.198 4.198 20 C 0.366 3.634 21 O -0.457 6.457 22 O -0.316 6.316 23 H 0.144 0.856 24 H 0.039 0.961 25 H 0.027 0.973 26 H 0.073 0.927 27 H 0.163 0.837 28 H 0.196 0.804 29 H 0.132 0.868 30 H 0.198 0.802 31 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -2.807 1.238 17.185 17.457 hybrid contribution 0.003 0.642 -0.604 0.881 sum -2.804 1.879 16.581 16.921 Atomic orbital electron populations 1.81219 1.12860 1.10248 1.08666 1.25827 0.92787 0.92693 0.92519 1.16066 0.83224 1.07536 0.94927 1.20996 0.94009 0.98580 0.96337 1.20481 0.93105 0.93690 0.96735 1.18218 0.94673 0.96326 0.89475 1.21406 1.35904 0.93308 1.05888 0.92114 1.25796 0.95483 0.99780 0.97885 1.70052 1.39160 1.28736 1.18813 0.85569 0.78931 0.79939 0.77369 1.19575 1.21271 1.19220 1.21467 1.01598 0.96756 0.91084 1.21640 0.91427 0.96708 0.99439 1.18679 0.93814 1.02832 0.90225 1.22229 0.99440 0.90174 0.90984 1.22360 1.02586 1.06864 0.88027 1.21188 0.85029 0.71661 0.85560 1.90946 1.17189 1.49727 1.87832 1.84597 1.44705 1.83121 1.19182 0.85612 0.96085 0.97293 0.92687 0.83682 0.80406 0.86760 0.80246 0.70761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.54 18.54 19.00 0.35 -15.19 16 2 C 0.28 8.53 13.95 88.33 1.23 9.76 16 3 C -0.01 -0.40 5.77 -21.05 -0.12 -0.52 16 4 C -0.08 -2.56 9.38 22.51 0.21 -2.35 16 5 C -0.04 -1.40 5.07 -19.83 -0.10 -1.50 16 6 C 0.05 2.28 5.09 29.10 0.15 2.43 16 7 C -0.53 -26.79 9.09 25.60 0.23 -26.56 16 8 H 0.06 3.01 7.74 -2.91 -0.02 2.98 16 9 C 0.01 0.48 5.46 84.65 0.46 0.95 16 10 N -0.93 -52.11 13.29 21.45 0.28 -51.83 16 11 Si 0.96 41.40 29.54 68.60 2.03 43.43 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 15 C -0.09 -2.44 9.66 22.28 0.22 -2.23 16 16 C -0.07 -1.51 9.40 22.55 0.21 -1.30 16 17 C -0.05 -1.24 5.90 -19.93 -0.12 -1.36 16 18 C -0.01 -0.20 9.01 23.82 0.21 0.01 16 19 C -0.18 -3.07 9.54 23.62 0.23 -2.84 16 20 C 0.52 10.18 8.26 69.92 0.58 10.76 16 21 O -0.56 -15.60 17.02 19.46 0.33 -15.27 16 22 O -0.50 -6.46 13.44 -58.12 -0.78 -7.24 16 23 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 24 H 0.02 1.00 8.08 -2.38 -0.02 0.98 16 25 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 26 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 27 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 28 H 0.18 2.00 6.17 -2.91 -0.02 1.98 16 29 H 0.11 2.94 6.67 -2.91 -0.02 2.92 16 30 H 0.18 1.82 6.08 -2.91 -0.02 1.81 16 31 H 0.43 1.91 9.11 -74.05 -0.67 1.24 16 Total: -1.00 -66.35 295.09 6.12 -60.23 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 0.51 Total: 0.62 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 3.39 Total: -14.75 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: 0.64 Total: -67.02 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.45 Total: -22.51 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -66.35 6.12 -60.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514270476.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.660 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds