Wall clock time and date at job start Mon Mar 30 2020 07:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39779 * 119.97868 * 55.35803 * 3 2 1 5 5 C 1.36572 * 120.14676 * 179.97438 * 4 3 2 6 6 C 1.39957 * 120.10717 * 359.96019 * 5 4 3 7 7 C 1.47140 * 120.02208 * 180.02562 * 6 5 4 8 8 C 1.34914 * 120.00168 * 0.02562 * 7 6 5 9 9 C 1.46330 * 120.00225 * 179.97438 * 8 7 6 10 10 O 1.21618 * 119.99780 * 359.97438 * 9 8 7 11 11 O 1.34892 * 120.00292 * 180.02562 * 9 8 7 12 12 C 1.39952 * 119.95516 * 0.04172 * 6 5 4 13 13 C 1.50698 * 120.07128 * 180.25676 * 12 6 5 14 14 C 1.50702 * 109.47111 * 84.72510 * 13 12 6 15 15 H 1.07997 * 120.00108 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99782 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99999 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99936 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46988 * 90.00042 * 18 16 14 20 20 H 1.48497 * 109.47221 * 210.00005 * 18 16 14 21 21 H 1.48501 * 109.47205 * 330.00212 * 18 16 14 22 22 C 1.37645 * 119.85161 * 359.97438 * 12 6 5 23 23 H 1.08000 * 119.92643 * 359.97438 * 4 3 2 24 24 H 1.08004 * 119.94939 * 179.97438 * 5 4 3 25 25 H 1.08005 * 119.99834 * 180.02562 * 7 6 5 26 26 H 1.08005 * 119.99998 * 359.97438 * 8 7 6 27 27 H 0.96703 * 117.00498 * 179.97438 * 11 9 8 28 28 H 1.09007 * 109.46873 * 204.71931 * 13 12 6 29 29 H 1.08996 * 109.47447 * 324.72106 * 13 12 6 30 30 H 0.97006 * 119.99718 * 180.02562 * 17 16 14 31 31 H 1.08003 * 120.04837 * 179.97438 * 22 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2667 -0.6873 -0.9961 5 6 4.6324 -0.6885 -0.9997 6 6 5.3377 0.0000 -0.0061 7 6 6.8091 -0.0021 -0.0121 8 6 7.4788 -0.6675 -0.9759 9 6 8.9421 -0.6691 -0.9822 10 8 9.5545 -0.0703 -0.1188 11 8 9.6117 -1.3339 -1.9462 12 6 4.6425 0.6902 0.9934 13 6 5.3993 1.4373 2.0612 14 6 5.7570 2.8111 1.5555 15 1 5.4659 3.1129 0.5602 16 6 6.4560 3.6826 2.3634 17 7 6.8100 3.3153 3.5756 18 14 6.9001 5.3853 1.7364 19 1 5.8111 6.3368 2.0743 20 1 8.1643 5.8333 2.3736 21 1 7.0776 5.3393 0.2627 22 6 3.2661 0.6900 0.9955 23 1 2.7254 -1.2191 -1.7647 24 1 5.1691 -1.2215 -1.7707 25 1 7.3530 0.5290 0.7551 26 1 6.9349 -1.1989 -1.7429 27 1 10.5776 -1.3059 -1.9089 28 1 4.7767 1.5285 2.9513 29 1 6.3103 0.8928 2.3093 30 1 7.3015 3.9287 4.1441 31 1 2.7264 1.2213 1.7655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514270752.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:49 Heat of formation + Delta-G solvation = -33.079275 kcal Electronic energy + Delta-G solvation = -17424.455039 eV Core-core repulsion = 14442.874327 eV Total energy + Delta-G solvation = -2981.580712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.92442 -39.37645 -36.54574 -35.89997 -33.99554 -33.63780 -31.65395 -30.02424 -27.41274 -25.41526 -23.55929 -22.51699 -21.27536 -19.35115 -18.03704 -17.87729 -16.70963 -16.43685 -15.36355 -15.31494 -15.16297 -14.66519 -14.05972 -13.90016 -13.34774 -13.13519 -12.82470 -12.72457 -12.61564 -12.05427 -11.90030 -11.75870 -11.42540 -11.12280 -11.08974 -10.64354 -10.58421 -10.37821 -10.11549 -9.78825 -9.64065 -8.55179 -8.53716 -7.97776 -6.16936 -4.22481 0.37086 1.66151 1.77479 2.76206 3.01350 3.25684 3.28337 3.33158 3.36024 3.42701 4.01238 4.15979 4.37952 4.90265 5.02423 5.11954 5.19653 5.38799 5.46476 5.63823 5.65618 5.97539 6.14905 6.29469 6.38193 6.52032 6.62933 6.66115 6.85632 7.05922 7.34144 7.46949 7.58162 7.77390 8.09959 8.10927 8.81846 9.43302 10.92610 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.010266 B = 0.008637 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.686168 B = 3241.015405 C = 5553.819930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.264 3.736 3 C -0.021 4.021 4 C -0.101 4.101 5 C -0.098 4.098 6 C -0.067 4.067 7 C 0.031 3.969 8 C -0.228 4.228 9 C 0.513 3.487 10 O -0.515 6.515 11 O -0.521 6.521 12 C -0.001 4.001 13 C 0.041 3.959 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.895 3.105 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.077 4.077 23 H 0.127 0.873 24 H 0.133 0.867 25 H 0.156 0.844 26 H 0.136 0.864 27 H 0.407 0.593 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 -9.190 -9.163 12.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.050 4.050 3 C -0.024 4.024 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.067 4.067 7 C 0.013 3.987 8 C -0.247 4.247 9 C 0.359 3.641 10 O -0.405 6.405 11 O -0.333 6.333 12 C -0.001 4.001 13 C 0.004 3.996 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.098 4.098 23 H 0.145 0.855 24 H 0.150 0.850 25 H 0.174 0.826 26 H 0.154 0.846 27 H 0.265 0.735 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.437 -8.981 -8.783 12.644 hybrid contribution 1.339 1.046 -0.302 1.726 sum -0.098 -7.934 -9.085 12.063 Atomic orbital electron populations 1.81196 1.12207 1.09027 1.08435 1.25841 0.92786 0.93192 0.93212 1.16203 0.83950 1.03233 0.99053 1.20570 0.94104 0.99730 0.97781 1.21008 0.93633 0.98793 0.98111 1.19035 0.92361 0.99226 0.96113 1.22862 0.92692 0.88356 0.94808 1.21966 0.89359 1.09029 1.04302 1.21066 0.89808 0.75153 0.78092 1.90984 1.70308 1.41785 1.37429 1.84627 1.26462 1.70082 1.52115 1.20931 0.92917 0.90901 0.95380 1.18529 0.95365 0.94402 0.91290 1.20949 1.36539 0.97492 1.00827 0.92190 1.24970 0.95401 0.98682 0.94796 1.69932 1.38413 1.36293 1.07851 0.86536 0.78003 0.84011 0.79232 1.20530 1.21020 1.19673 1.21148 0.94000 0.97290 0.97320 0.85470 0.84960 0.82634 0.84592 0.73516 0.94463 0.94237 0.92554 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.01 18.54 41.83 0.78 -6.24 16 2 C 0.26 3.86 15.32 -22.48 -0.34 3.51 16 3 C -0.02 -0.29 5.74 -106.82 -0.61 -0.91 16 4 C -0.10 -1.21 9.68 -39.61 -0.38 -1.59 16 5 C -0.10 -1.20 9.35 -39.54 -0.37 -1.57 16 6 C -0.07 -1.04 5.87 -105.00 -0.62 -1.66 16 7 C 0.03 0.51 8.89 -37.15 -0.33 0.18 16 8 C -0.23 -3.15 9.54 -37.51 -0.36 -3.51 16 9 C 0.51 7.62 8.26 33.98 0.28 7.90 16 10 O -0.52 -9.71 17.02 -19.36 -0.33 -10.04 16 11 O -0.52 -5.81 13.44 -41.02 -0.55 -6.37 16 12 C 0.00 -0.02 5.11 -104.20 -0.53 -0.55 16 13 C 0.04 0.91 4.47 -29.03 -0.13 0.78 16 14 C -0.52 -13.15 9.09 -34.44 -0.31 -13.46 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 18 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 C -0.08 -1.23 9.37 -39.23 -0.37 -1.59 16 23 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 24 H 0.13 1.24 6.14 -52.48 -0.32 0.92 16 25 H 0.16 3.06 5.92 -52.48 -0.31 2.75 16 26 H 0.14 1.46 6.06 -52.48 -0.32 1.14 16 27 H 0.41 2.76 9.11 45.56 0.42 3.18 16 28 H 0.04 0.88 8.05 -51.92 -0.42 0.46 16 29 H 0.04 0.93 6.60 -51.93 -0.34 0.59 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 293.34 15.07 4.42 4.42 Total: -1.00 -30.31 293.34 -5.83 -36.14 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -1.68 Total: 1.24 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -4.17 Total: -10.86 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 1.51 Total: -30.22 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.88 Total: -16.41 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.31 -5.83 -36.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514270752.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.058 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds