Wall clock time and date at job start Mon Mar 30 2020 07:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39779 * 119.97868 * 55.35803 * 3 2 1 5 5 C 1.36572 * 120.14676 * 179.97438 * 4 3 2 6 6 C 1.39957 * 120.10717 * 359.96019 * 5 4 3 7 7 C 1.47140 * 120.02208 * 180.02562 * 6 5 4 8 8 C 1.34914 * 120.00168 * 0.02562 * 7 6 5 9 9 C 1.46330 * 120.00225 * 179.97438 * 8 7 6 10 10 O 1.21618 * 119.99780 * 359.97438 * 9 8 7 11 11 O 1.34892 * 120.00292 * 180.02562 * 9 8 7 12 12 C 1.39952 * 119.95516 * 0.04172 * 6 5 4 13 13 C 1.50698 * 120.07128 * 180.25676 * 12 6 5 14 14 C 1.50702 * 109.47111 * 84.72510 * 13 12 6 15 15 H 1.07997 * 120.00108 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99782 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99999 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99936 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46988 * 90.00042 * 18 16 14 20 20 H 1.48497 * 109.47221 * 210.00005 * 18 16 14 21 21 H 1.48501 * 109.47205 * 330.00212 * 18 16 14 22 22 C 1.37645 * 119.85161 * 359.97438 * 12 6 5 23 23 H 1.08000 * 119.92643 * 359.97438 * 4 3 2 24 24 H 1.08004 * 119.94939 * 179.97438 * 5 4 3 25 25 H 1.08005 * 119.99834 * 180.02562 * 7 6 5 26 26 H 1.08005 * 119.99998 * 359.97438 * 8 7 6 27 27 H 0.96703 * 117.00498 * 179.97438 * 11 9 8 28 28 H 1.09007 * 109.46873 * 204.71931 * 13 12 6 29 29 H 1.08996 * 109.47447 * 324.72106 * 13 12 6 30 30 H 0.97006 * 119.99718 * 180.02562 * 17 16 14 31 31 H 1.08003 * 120.04837 * 179.97438 * 22 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2667 -0.6873 -0.9961 5 6 4.6324 -0.6885 -0.9997 6 6 5.3377 0.0000 -0.0061 7 6 6.8091 -0.0021 -0.0121 8 6 7.4788 -0.6675 -0.9759 9 6 8.9421 -0.6691 -0.9822 10 8 9.5545 -0.0703 -0.1188 11 8 9.6117 -1.3339 -1.9462 12 6 4.6425 0.6902 0.9934 13 6 5.3993 1.4373 2.0612 14 6 5.7570 2.8111 1.5555 15 1 5.4659 3.1129 0.5602 16 6 6.4560 3.6826 2.3634 17 7 6.8100 3.3153 3.5756 18 14 6.9001 5.3853 1.7364 19 1 5.8111 6.3368 2.0743 20 1 8.1643 5.8333 2.3736 21 1 7.0776 5.3393 0.2627 22 6 3.2661 0.6900 0.9955 23 1 2.7254 -1.2191 -1.7647 24 1 5.1691 -1.2215 -1.7707 25 1 7.3530 0.5290 0.7551 26 1 6.9349 -1.1989 -1.7429 27 1 10.5776 -1.3059 -1.9089 28 1 4.7767 1.5285 2.9513 29 1 6.3103 0.8928 2.3093 30 1 7.3015 3.9287 4.1441 31 1 2.7264 1.2213 1.7655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514270752.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:48 Heat of formation + Delta-G solvation = -51.352471 kcal Electronic energy + Delta-G solvation = -17425.247424 eV Core-core repulsion = 14442.874327 eV Total energy + Delta-G solvation = -2982.373097 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10496 -40.55249 -37.75137 -37.00530 -35.52641 -35.07131 -33.24217 -31.17974 -29.07779 -26.61285 -25.27924 -23.68316 -22.53971 -20.51395 -19.17578 -19.12033 -18.42728 -17.87564 -16.56885 -16.49300 -16.47397 -16.32236 -15.19852 -15.10701 -14.53457 -14.47079 -14.34493 -14.14206 -13.84927 -13.43365 -13.34463 -13.15093 -12.78652 -12.68568 -12.52830 -12.27450 -12.18505 -11.66332 -11.54886 -11.33088 -11.30214 -10.57861 -9.74196 -9.20718 -8.19398 -6.30405 -0.79357 0.53664 0.58181 1.39845 1.41463 1.50834 1.60285 1.84786 2.23657 2.26921 2.40841 2.85967 3.03333 3.14378 3.84237 3.93771 4.00555 4.28832 4.32055 4.45010 4.53184 4.81845 5.04273 5.08078 5.21159 5.32260 5.36895 5.44165 5.55661 5.68112 5.75758 5.88682 5.92312 6.16362 6.42771 6.82484 7.07697 7.38288 8.89835 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.010266 B = 0.008637 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.686168 B = 3241.015405 C = 5553.819930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.284 3.716 3 C -0.020 4.020 4 C -0.074 4.074 5 C -0.083 4.083 6 C -0.063 4.063 7 C 0.001 3.999 8 C -0.196 4.196 9 C 0.514 3.486 10 O -0.565 6.565 11 O -0.503 6.503 12 C -0.036 4.036 13 C 0.050 3.950 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.009 3.991 17 N -0.926 5.926 18 Si 0.952 3.048 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.265 1.265 22 C -0.083 4.083 23 H 0.171 0.829 24 H 0.178 0.822 25 H 0.108 0.892 26 H 0.184 0.816 27 H 0.428 0.572 28 H 0.011 0.989 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 -10.808 -12.802 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.030 4.030 3 C -0.023 4.023 4 C -0.094 4.094 5 C -0.100 4.100 6 C -0.064 4.064 7 C -0.017 4.017 8 C -0.214 4.214 9 C 0.362 3.638 10 O -0.459 6.459 11 O -0.316 6.316 12 C -0.036 4.036 13 C 0.013 3.987 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.190 4.190 17 N -0.566 5.566 18 Si 0.777 3.223 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.189 1.189 22 C -0.103 4.103 23 H 0.188 0.812 24 H 0.195 0.805 25 H 0.126 0.874 26 H 0.201 0.799 27 H 0.289 0.711 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.947 -10.615 -12.456 16.481 hybrid contribution 1.580 1.416 0.728 2.243 sum -0.367 -9.199 -11.728 14.910 Atomic orbital electron populations 1.81226 1.13015 1.10048 1.09393 1.25792 0.92613 0.92307 0.92337 1.16158 0.83461 1.03504 0.99218 1.21052 0.94011 0.97392 0.96946 1.21373 0.93786 0.97443 0.97391 1.19072 0.91879 0.99107 0.96308 1.22543 0.93326 0.90483 0.95392 1.22288 0.88909 1.06710 1.03483 1.21338 0.90452 0.74336 0.77700 1.90985 1.71412 1.43966 1.39530 1.84572 1.28363 1.68547 1.50125 1.20444 0.93533 0.93645 0.96005 1.18189 0.94478 0.93857 0.92133 1.21322 1.35292 0.98765 1.00523 0.92209 1.25787 0.95797 1.02326 0.95047 1.70055 1.39911 1.37528 1.09142 0.85636 0.77679 0.80076 0.78905 1.19757 1.21159 1.18904 1.20980 0.93236 0.98003 0.98112 0.81176 0.80497 0.87353 0.79925 0.71085 0.97106 0.96689 0.92754 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.12 18.54 19.00 0.35 -13.76 16 2 C 0.28 7.64 15.32 88.33 1.35 8.99 16 3 C -0.02 -0.50 5.74 -21.29 -0.12 -0.63 16 4 C -0.07 -1.37 9.68 22.25 0.22 -1.16 16 5 C -0.08 -1.62 9.35 22.30 0.21 -1.41 16 6 C -0.06 -1.88 5.87 -20.11 -0.12 -2.00 16 7 C 0.00 0.04 8.89 23.84 0.21 0.25 16 8 C -0.20 -4.84 9.54 23.61 0.23 -4.61 16 9 C 0.51 14.32 8.26 69.93 0.58 14.90 16 10 O -0.57 -21.59 17.02 19.45 0.33 -21.26 16 11 O -0.50 -9.45 13.44 -58.06 -0.78 -10.23 16 12 C -0.04 -1.32 5.11 -19.59 -0.10 -1.42 16 13 C 0.05 2.41 4.47 29.10 0.13 2.54 16 14 C -0.52 -27.60 9.09 25.60 0.23 -27.37 16 15 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 16 C 0.01 0.51 5.46 84.65 0.46 0.97 16 17 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 18 Si 0.95 43.59 29.54 68.60 2.03 45.62 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 C -0.08 -2.63 9.37 22.50 0.21 -2.42 16 23 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 24 H 0.18 1.92 6.14 -2.91 -0.02 1.90 16 25 H 0.11 4.60 5.92 -2.91 -0.02 4.58 16 26 H 0.18 2.73 6.06 -2.91 -0.02 2.71 16 27 H 0.43 4.47 9.11 -74.06 -0.67 3.80 16 28 H 0.01 0.55 8.05 -2.38 -0.02 0.53 16 29 H 0.01 0.78 6.60 -2.39 -0.02 0.76 16 30 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 31 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -70.84 293.34 6.22 -64.62 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 0.52 Total: 2.59 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 3.49 Total: -13.35 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: 0.64 Total: -67.99 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.45 Total: -31.49 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.84 6.22 -64.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514270752.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.272 kcal (2) G-P(sol) polarization free energy of solvation -70.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds