Wall clock time and date at job start Mon Mar 30 2020 06:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.41123 * 120.23663 * 273.05503 * 3 2 1 5 5 C 1.47005 * 120.24297 * 359.97438 * 4 3 2 6 6 C 1.34974 * 119.99915 * 179.72769 * 5 4 3 7 7 C 1.46323 * 119.99888 * 179.72756 * 6 5 4 8 8 O 1.21609 * 120.00026 * 359.97438 * 7 6 5 9 9 O 1.34904 * 119.99928 * 179.97438 * 7 6 5 10 10 C 1.39635 * 119.50957 * 179.72719 * 4 3 2 11 11 C 1.38002 * 119.97314 * 0.26938 * 10 4 3 12 12 C 1.38502 * 120.47658 * 0.02562 * 11 10 4 13 13 C 1.38109 * 120.49667 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99440 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47100 * 265.00169 * 14 13 12 16 16 H 1.08004 * 119.99843 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00150 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99765 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00004 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47145 * 59.99849 * 19 17 15 21 21 H 1.48502 * 109.46993 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47043 * 299.99850 * 19 17 15 23 23 H 1.08000 * 120.00526 * 359.72721 * 5 4 3 24 24 H 1.07997 * 120.00286 * 359.97438 * 6 5 4 25 25 H 0.96691 * 116.99906 * 179.97438 * 9 7 6 26 26 H 1.08006 * 120.01070 * 180.29632 * 10 4 3 27 27 H 1.08000 * 119.76262 * 179.97438 * 11 10 4 28 28 H 1.07999 * 119.75424 * 179.97438 * 12 11 10 29 29 H 1.09002 * 109.46794 * 24.99737 * 14 13 12 30 30 H 1.08996 * 109.47677 * 145.00033 * 14 13 12 31 31 H 0.96996 * 119.99803 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2787 -0.0640 1.2175 5 6 2.5543 -0.1320 2.4949 6 6 3.2390 -0.1992 3.6562 7 6 2.5181 -0.2608 4.9280 8 8 1.3021 -0.2509 4.9388 9 8 3.2024 -0.3285 6.0886 10 6 4.6749 -0.0682 1.1995 11 6 5.3491 -0.0038 -0.0029 12 6 4.6508 0.0658 -1.1970 13 6 3.2697 0.0713 -1.2019 14 6 2.5213 0.1468 -2.5078 15 6 2.1697 1.5821 -2.8030 16 1 2.4589 2.3617 -2.1137 17 6 1.4789 1.9002 -3.9531 18 7 1.1272 0.9510 -4.7927 19 14 1.0424 3.6793 -4.3186 20 1 2.2864 4.4849 -4.4129 21 1 0.3061 3.7539 -5.6061 22 1 0.1882 4.2136 -3.2276 23 1 1.4744 -0.1281 2.5043 24 1 4.3189 -0.2035 3.6469 25 1 2.6826 -0.3671 6.9030 26 1 5.2269 -0.1223 2.1263 27 1 6.4290 -0.0069 -0.0128 28 1 5.1902 0.1163 -2.1312 29 1 3.1477 -0.2459 -3.3088 30 1 1.6080 -0.4440 -2.4380 31 1 0.6415 1.1748 -5.6019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514271174.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:48 Heat of formation + Delta-G solvation = -32.978039 kcal Electronic energy + Delta-G solvation = -17325.025206 eV Core-core repulsion = 14343.448884 eV Total energy + Delta-G solvation = -2981.576322 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22035 -39.40309 -36.27617 -35.82302 -34.72949 -33.17382 -31.48679 -30.27854 -27.38860 -25.25610 -23.87556 -22.67851 -21.35723 -18.97699 -18.62313 -18.02908 -16.88572 -16.45757 -15.65087 -15.49555 -15.17879 -14.59091 -14.05243 -13.67789 -13.58265 -13.27602 -12.59747 -12.40043 -12.29364 -12.14140 -12.01210 -11.72627 -11.48506 -11.30235 -11.05719 -10.77340 -10.67989 -10.60373 -10.40899 -9.78653 -9.61680 -8.52863 -8.40606 -8.14298 -6.15584 -4.21056 0.27078 1.32966 1.91090 2.93099 2.95660 3.27103 3.29009 3.31892 3.34680 3.44215 4.26186 4.36544 4.43087 4.67382 4.75415 5.14651 5.16030 5.21157 5.33077 5.42488 5.63116 5.90003 5.97032 6.09697 6.27179 6.32238 6.51583 6.63753 6.68503 7.07928 7.32989 7.46703 7.76961 7.77940 8.08549 8.12063 8.82482 9.44286 10.94414 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.004907 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.900852 B = 5704.483036 C = 6240.782653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.264 3.736 3 C -0.005 4.005 4 C -0.051 4.051 5 C 0.010 3.990 6 C -0.207 4.207 7 C 0.515 3.485 8 O -0.521 6.521 9 O -0.516 6.516 10 C -0.119 4.119 11 C -0.099 4.099 12 C -0.104 4.104 13 C 0.009 3.991 14 C 0.041 3.959 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.896 3.104 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.134 0.866 24 H 0.146 0.854 25 H 0.410 0.590 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.599 -3.122 14.628 18.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.051 4.051 3 C -0.008 4.008 4 C -0.053 4.053 5 C -0.008 4.008 6 C -0.226 4.226 7 C 0.361 3.639 8 O -0.412 6.412 9 O -0.327 6.327 10 C -0.137 4.137 11 C -0.117 4.117 12 C -0.122 4.122 13 C 0.007 3.993 14 C 0.004 3.996 15 C -0.558 4.558 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.723 3.277 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.152 0.848 24 H 0.163 0.837 25 H 0.268 0.732 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.637 -3.139 14.089 16.821 hybrid contribution -0.209 1.008 0.198 1.048 sum 8.427 -2.130 14.287 16.724 Atomic orbital electron populations 1.81134 1.12062 1.08163 1.07684 1.25325 0.92514 0.94022 0.93276 1.16100 0.84702 1.06663 0.93381 1.18684 0.93328 1.02810 0.90481 1.22540 1.00501 0.87030 0.90750 1.22046 1.01033 1.10971 0.88552 1.21037 0.85659 0.72326 0.84879 1.90955 1.15349 1.46739 1.88169 1.84632 1.44915 1.85923 1.17253 1.21136 0.92137 1.01822 0.98599 1.21243 1.00069 0.98274 0.92153 1.21295 0.93391 0.98926 0.98561 1.20844 0.93840 0.88698 0.95937 1.18519 0.95276 0.98478 0.87325 1.20889 1.37099 0.91324 1.06445 0.92295 1.24973 0.95312 0.97619 0.95973 1.69928 1.38678 1.32339 1.11723 0.86583 0.78780 0.84626 0.77720 1.19919 1.21067 1.20087 0.84800 0.83673 0.73163 0.85101 0.85415 0.84752 0.94183 0.94876 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.36 18.54 41.84 0.78 -8.59 16 2 C 0.26 5.46 12.50 -22.47 -0.28 5.17 16 3 C -0.01 -0.09 5.77 -106.46 -0.61 -0.71 16 4 C -0.05 -0.72 5.90 -104.73 -0.62 -1.34 16 5 C 0.01 0.14 9.01 -37.19 -0.34 -0.19 16 6 C -0.21 -2.32 9.54 -37.49 -0.36 -2.68 16 7 C 0.51 6.22 8.26 33.98 0.28 6.50 16 8 O -0.52 -8.18 17.02 -19.35 -0.33 -8.51 16 9 O -0.52 -4.52 13.44 -41.05 -0.55 -5.07 16 10 C -0.12 -1.37 9.41 -39.15 -0.37 -1.73 16 11 C -0.10 -1.15 10.02 -39.57 -0.40 -1.55 16 12 C -0.10 -1.56 9.66 -39.53 -0.38 -1.94 16 13 C 0.01 0.18 5.10 -104.25 -0.53 -0.35 16 14 C 0.04 0.97 4.62 -29.03 -0.13 0.84 16 15 C -0.52 -13.83 9.09 -34.44 -0.31 -14.14 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 19 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.13 2.06 6.67 -52.49 -0.35 1.71 16 24 H 0.15 1.22 6.08 -52.49 -0.32 0.90 16 25 H 0.41 1.81 9.11 45.56 0.42 2.23 16 26 H 0.13 1.06 6.16 -52.48 -0.32 0.74 16 27 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 29 H 0.04 0.97 8.05 -51.93 -0.42 0.55 16 30 H 0.03 0.87 7.26 -51.93 -0.38 0.49 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -32.60 292.98 -5.88 -38.48 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -1.76 Total: -1.63 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -4.15 Total: -10.46 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 1.51 Total: -33.51 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.88 Total: -13.58 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.60 -5.88 -38.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514271174.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.500 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds