Wall clock time and date at job start Mon Mar 30 2020 06:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.41123 * 120.23663 * 273.05503 * 3 2 1 5 5 C 1.47005 * 120.24297 * 359.97438 * 4 3 2 6 6 C 1.34974 * 119.99915 * 179.72769 * 5 4 3 7 7 C 1.46323 * 119.99888 * 179.72756 * 6 5 4 8 8 O 1.21609 * 120.00026 * 359.97438 * 7 6 5 9 9 O 1.34904 * 119.99928 * 179.97438 * 7 6 5 10 10 C 1.39635 * 119.50957 * 179.72719 * 4 3 2 11 11 C 1.38002 * 119.97314 * 0.26938 * 10 4 3 12 12 C 1.38502 * 120.47658 * 0.02562 * 11 10 4 13 13 C 1.38109 * 120.49667 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99440 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47100 * 265.00169 * 14 13 12 16 16 H 1.08004 * 119.99843 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00150 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99765 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00004 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47145 * 59.99849 * 19 17 15 21 21 H 1.48502 * 109.46993 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47043 * 299.99850 * 19 17 15 23 23 H 1.08000 * 120.00526 * 359.72721 * 5 4 3 24 24 H 1.07997 * 120.00286 * 359.97438 * 6 5 4 25 25 H 0.96691 * 116.99906 * 179.97438 * 9 7 6 26 26 H 1.08006 * 120.01070 * 180.29632 * 10 4 3 27 27 H 1.08000 * 119.76262 * 179.97438 * 11 10 4 28 28 H 1.07999 * 119.75424 * 179.97438 * 12 11 10 29 29 H 1.09002 * 109.46794 * 24.99737 * 14 13 12 30 30 H 1.08996 * 109.47677 * 145.00033 * 14 13 12 31 31 H 0.96996 * 119.99803 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2787 -0.0640 1.2175 5 6 2.5543 -0.1320 2.4949 6 6 3.2390 -0.1992 3.6562 7 6 2.5181 -0.2608 4.9280 8 8 1.3021 -0.2509 4.9388 9 8 3.2024 -0.3285 6.0886 10 6 4.6749 -0.0682 1.1995 11 6 5.3491 -0.0038 -0.0029 12 6 4.6508 0.0658 -1.1970 13 6 3.2697 0.0713 -1.2019 14 6 2.5213 0.1468 -2.5078 15 6 2.1697 1.5821 -2.8030 16 1 2.4589 2.3617 -2.1137 17 6 1.4789 1.9002 -3.9531 18 7 1.1272 0.9510 -4.7927 19 14 1.0424 3.6793 -4.3186 20 1 2.2864 4.4849 -4.4129 21 1 0.3061 3.7539 -5.6061 22 1 0.1882 4.2136 -3.2276 23 1 1.4744 -0.1281 2.5043 24 1 4.3189 -0.2035 3.6469 25 1 2.6826 -0.3671 6.9030 26 1 5.2269 -0.1223 2.1263 27 1 6.4290 -0.0069 -0.0128 28 1 5.1902 0.1163 -2.1312 29 1 3.1477 -0.2459 -3.3088 30 1 1.6080 -0.4440 -2.4380 31 1 0.6415 1.1748 -5.6019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514271174.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:48 Heat of formation + Delta-G solvation = -54.209064 kcal Electronic energy + Delta-G solvation = -17325.945853 eV Core-core repulsion = 14343.448884 eV Total energy + Delta-G solvation = -2982.496969 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.19290 -40.57677 -37.40733 -37.14732 -36.08814 -34.85118 -32.95281 -31.49359 -29.04601 -26.29166 -25.57622 -23.94887 -22.56092 -20.07038 -19.75037 -19.05337 -18.54749 -17.88581 -16.79815 -16.59288 -16.48587 -16.13098 -15.30374 -15.17380 -14.56491 -14.51307 -14.30422 -14.06425 -13.82851 -13.51275 -13.36925 -13.20358 -12.83560 -12.63448 -12.60373 -12.35920 -12.15892 -11.78585 -11.74930 -11.48802 -11.25415 -10.64209 -9.67877 -9.28314 -8.25382 -6.37428 -0.78518 0.14934 0.82737 1.35344 1.38420 1.45331 1.70273 1.96863 2.04721 2.12869 2.35756 2.98618 3.06512 3.07683 3.65965 3.75929 4.10502 4.25558 4.28063 4.47005 4.50112 4.76802 4.91018 5.00263 5.21136 5.24700 5.29836 5.47581 5.52877 5.59168 5.68982 5.81241 5.96350 6.09960 6.52580 6.74971 6.97806 7.31447 8.84145 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.004907 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.900852 B = 5704.483036 C = 6240.782653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.041 4.041 4 C -0.037 4.037 5 C -0.020 4.020 6 C -0.170 4.170 7 C 0.516 3.484 8 O -0.565 6.565 9 O -0.500 6.500 10 C -0.098 4.098 11 C -0.069 4.069 12 C -0.112 4.112 13 C -0.018 4.018 14 C 0.049 3.951 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.008 3.992 18 N -0.927 5.927 19 Si 0.955 3.045 20 H -0.254 1.254 21 H -0.282 1.282 22 H -0.280 1.280 23 H 0.102 0.898 24 H 0.190 0.810 25 H 0.431 0.569 26 H 0.184 0.816 27 H 0.180 0.820 28 H 0.141 0.859 29 H 0.025 0.975 30 H -0.008 1.008 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.712 -2.423 17.324 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.044 4.044 4 C -0.039 4.039 5 C -0.038 4.038 6 C -0.188 4.188 7 C 0.363 3.637 8 O -0.460 6.460 9 O -0.313 6.313 10 C -0.115 4.115 11 C -0.087 4.087 12 C -0.130 4.130 13 C -0.020 4.020 14 C 0.012 3.988 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.567 5.567 19 Si 0.780 3.220 20 H -0.179 1.179 21 H -0.207 1.207 22 H -0.206 1.206 23 H 0.120 0.880 24 H 0.207 0.793 25 H 0.292 0.708 26 H 0.201 0.799 27 H 0.197 0.803 28 H 0.158 0.842 29 H 0.044 0.956 30 H 0.010 0.990 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.778 -2.438 16.821 21.264 hybrid contribution -1.357 0.723 -0.397 1.588 sum 11.421 -1.716 16.423 20.078 Atomic orbital electron populations 1.81087 1.13714 1.10698 1.09501 1.26091 0.93492 0.92474 0.91696 1.16267 0.83063 1.10100 0.94977 1.18787 0.94660 1.01541 0.88925 1.22273 0.99317 0.90597 0.91662 1.22373 1.02720 1.06705 0.86979 1.21264 0.85027 0.71286 0.86080 1.90964 1.17507 1.48604 1.88877 1.84581 1.44555 1.84838 1.17345 1.21731 0.90445 0.98575 1.00771 1.21749 1.02334 0.94336 0.90286 1.21420 0.91505 0.99210 1.00850 1.20400 0.95461 0.92596 0.93566 1.18206 0.93990 0.96374 0.90259 1.21283 1.36258 0.92873 1.06012 0.92313 1.25846 0.95509 1.01628 0.96117 1.70054 1.39956 1.34359 1.12315 0.85640 0.79059 0.80073 0.77228 1.17863 1.20704 1.20610 0.87995 0.79260 0.70778 0.79866 0.80264 0.84155 0.95648 0.98999 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -23.20 18.54 19.00 0.35 -22.85 16 2 C 0.28 12.26 12.50 88.33 1.10 13.37 16 3 C -0.04 -1.49 5.77 -21.06 -0.12 -1.61 16 4 C -0.04 -0.96 5.90 -19.93 -0.12 -1.08 16 5 C -0.02 -0.50 9.01 23.82 0.21 -0.28 16 6 C -0.17 -3.07 9.54 23.62 0.23 -2.84 16 7 C 0.52 10.93 8.26 69.92 0.58 11.51 16 8 O -0.57 -17.33 17.02 19.48 0.33 -17.00 16 9 O -0.50 -6.62 13.44 -58.19 -0.78 -7.40 16 10 C -0.10 -1.65 9.41 22.55 0.21 -1.44 16 11 C -0.07 -1.20 10.02 22.28 0.22 -0.98 16 12 C -0.11 -3.11 9.66 22.30 0.22 -2.90 16 13 C -0.02 -0.67 5.10 -19.62 -0.10 -0.77 16 14 C 0.05 2.46 4.62 29.10 0.13 2.60 16 15 C -0.53 -29.16 9.09 25.60 0.23 -28.93 16 16 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 17 C 0.01 0.44 5.46 84.65 0.46 0.90 16 18 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 19 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 20 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H 0.10 3.28 6.67 -2.91 -0.02 3.26 16 24 H 0.19 1.68 6.08 -2.91 -0.02 1.66 16 25 H 0.43 2.20 9.11 -74.06 -0.67 1.53 16 26 H 0.18 1.25 6.16 -2.91 -0.02 1.23 16 27 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 28 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 29 H 0.03 1.31 8.05 -2.39 -0.02 1.29 16 30 H -0.01 -0.48 7.26 -2.39 -0.02 -0.49 16 31 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -78.68 292.98 5.99 -72.69 By element: Atomic # 1 Polarization: -4.44 SS G_CDS: 0.51 Total: -3.92 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 3.26 Total: -12.45 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: 0.64 Total: -78.62 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.45 Total: -24.40 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -78.68 5.99 -72.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514271174.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.478 kcal (2) G-P(sol) polarization free energy of solvation -78.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds