Wall clock time and date at job start Mon Mar 30 2020 06:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47477 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47441 * 300.00170 * 3 2 1 6 6 H 1.48500 * 109.47331 * 60.00086 * 3 2 1 7 7 C 1.37872 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.39246 * 120.03165 * 89.99982 * 10 9 7 12 12 N 1.31129 * 121.74233 * 180.02562 * 11 10 9 13 13 C 1.33722 * 121.33236 * 359.97438 * 12 11 10 14 14 C 1.40480 * 120.99434 * 180.02562 * 13 12 11 15 15 C 1.36504 * 119.95141 * 179.90163 * 14 13 12 16 16 C 1.40596 * 120.73673 * 0.03816 * 15 14 13 17 17 C 1.36441 * 120.62682 * 0.04041 * 16 15 14 18 18 C 1.40439 * 119.78602 * 359.92457 * 17 16 15 19 19 C 1.36643 * 120.02816 * 270.02069 * 10 9 7 20 20 O 1.36590 * 108.40420 * 180.02562 * 16 15 14 21 21 C 1.43935 * 105.51398 * 17.45719 * 20 16 15 22 22 O 1.36563 * 130.90286 * 180.02562 * 15 14 13 23 23 H 0.97005 * 119.99863 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47227 * 60.00299 * 9 7 2 25 25 H 1.09005 * 109.47019 * 300.00123 * 9 7 2 26 26 H 1.08000 * 119.13062 * 0.02562 * 11 10 9 27 27 H 1.07998 * 120.02983 * 359.87710 * 14 13 12 28 28 H 1.07991 * 120.11030 * 179.97438 * 17 16 15 29 29 H 1.07996 * 120.91332 * 0.02562 * 19 10 9 30 30 H 1.09000 * 110.53268 * 91.07646 * 21 20 16 31 31 H 1.09004 * 110.53482 * 213.84554 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6833 -4.1742 1.2050 12 7 3.5354 -5.1701 1.2441 13 6 4.0093 -5.7243 0.1232 14 6 4.9216 -6.7913 0.1734 15 6 5.3902 -7.3425 -0.9842 16 6 4.9707 -6.8538 -2.2340 17 6 4.0867 -5.8175 -2.3140 18 6 3.5887 -5.2330 -1.1382 19 6 2.6751 -4.1640 -1.1836 20 8 5.5891 -7.5809 -3.2110 21 6 6.0622 -8.7749 -2.5612 22 8 6.2662 -8.3685 -1.1955 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 2.3232 -3.7537 2.1323 27 1 5.2524 -7.1752 1.1271 28 1 3.7704 -5.4485 -3.2784 29 1 2.3348 -3.7648 -2.1276 30 1 5.3121 -9.5637 -2.6176 31 1 7.0008 -9.1059 -3.0058 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527419250.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:27 Heat of formation + Delta-G solvation = -16.940995 kcal Electronic energy + Delta-G solvation = -17771.366040 eV Core-core repulsion = 14790.485136 eV Total energy + Delta-G solvation = -2980.880904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.20035 -40.04457 -36.39555 -36.00025 -33.93257 -32.60213 -30.59299 -29.51426 -27.28768 -26.04517 -23.86355 -23.60721 -22.11165 -21.72207 -19.14765 -17.76150 -17.56577 -16.53194 -16.37583 -15.70366 -15.14639 -14.99148 -14.50452 -14.17272 -13.94741 -13.88142 -13.13174 -13.05099 -12.55143 -12.51919 -12.16172 -11.80514 -11.66004 -11.27128 -10.83099 -10.67103 -10.37004 -10.09564 -9.86886 -9.28429 -9.00899 -8.52395 -7.96841 -7.77258 -6.15198 -4.20341 0.61845 1.01586 2.29003 2.61203 3.08900 3.24239 3.32744 3.34044 3.37644 4.31321 4.38209 4.46995 4.50617 4.67713 4.83537 4.91453 5.09006 5.20036 5.24716 5.41719 5.55724 5.90509 5.91836 5.97680 6.08547 6.15861 6.28852 6.58682 6.78313 6.98292 7.19242 7.38912 7.52872 7.79701 8.15433 8.29393 8.84749 9.44982 10.94367 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.038904 B = 0.004437 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.540091 B = 6308.693266 C = 6547.704677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.050 3.950 10 C -0.079 4.079 11 C 0.145 3.855 12 N -0.481 5.481 13 C 0.121 3.879 14 C -0.078 4.078 15 C 0.040 3.960 16 C 0.030 3.970 17 C -0.083 4.083 18 C -0.083 4.083 19 C -0.074 4.074 20 O -0.309 6.309 21 C 0.212 3.788 22 O -0.309 6.309 23 H 0.263 0.737 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.162 0.838 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.083 0.917 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.931 -14.559 -4.027 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.013 3.987 10 C -0.081 4.081 11 C -0.026 4.026 12 N -0.189 5.189 13 C -0.002 4.002 14 C -0.098 4.098 15 C -0.006 4.006 16 C -0.014 4.014 17 C -0.103 4.103 18 C -0.085 4.085 19 C -0.100 4.100 20 O -0.226 6.226 21 C 0.100 3.900 22 O -0.225 6.225 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.179 0.821 27 H 0.160 0.840 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.101 0.899 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.340 -14.939 -3.356 17.436 hybrid contribution 0.280 1.117 -0.967 1.504 sum 8.620 -13.821 -4.324 16.853 Atomic orbital electron populations 1.69955 1.06040 1.26974 1.49966 1.24989 0.94885 0.99321 0.94865 0.86466 0.80148 0.83305 0.77740 1.19636 1.20873 1.20800 1.21055 0.93095 0.89643 1.51785 0.92337 1.18374 0.92234 0.88968 0.99115 1.21465 0.97533 0.96528 0.92592 1.23052 0.90845 0.90059 0.98667 1.67980 1.11148 1.10593 1.29182 1.18221 0.97375 0.95832 0.88764 1.19373 0.97513 0.96707 0.96171 1.19304 0.94230 0.92606 0.94474 1.19425 0.98212 0.98022 0.85713 1.19776 0.95892 0.95606 0.99032 1.18492 0.99361 0.97903 0.92774 1.21259 0.95367 0.93643 0.99685 1.87372 1.70822 1.32004 1.32375 1.25541 1.01040 0.87582 0.75835 1.87359 1.55870 1.48864 1.30426 0.92707 0.94743 0.94590 0.82090 0.84003 0.84254 0.84333 0.89936 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.63 9.09 -34.44 -0.31 -13.95 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 10 C -0.08 -1.59 5.05 -104.82 -0.53 -2.12 16 11 C 0.14 2.73 10.81 -17.48 -0.19 2.54 16 12 N -0.48 -8.94 10.34 -10.99 -0.11 -9.05 16 13 C 0.12 2.13 6.60 -84.86 -0.56 1.57 16 14 C -0.08 -1.22 9.98 -39.36 -0.39 -1.61 16 15 C 0.04 0.59 7.07 -39.32 -0.28 0.31 16 16 C 0.03 0.44 7.07 -39.34 -0.28 0.17 16 17 C -0.08 -1.25 9.77 -39.40 -0.39 -1.64 16 18 C -0.08 -1.43 5.74 -106.80 -0.61 -2.04 16 19 C -0.07 -1.35 9.53 -39.23 -0.37 -1.72 16 20 O -0.31 -4.03 11.40 -45.97 -0.52 -4.55 16 21 C 0.21 2.03 8.86 101.05 0.90 2.92 16 22 O -0.31 -4.02 11.40 -45.88 -0.52 -4.54 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 25 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 26 H 0.16 2.77 8.06 -52.49 -0.42 2.34 16 27 H 0.14 1.99 8.06 -52.49 -0.42 1.56 16 28 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 278.17 15.07 4.19 4.19 Total: -1.00 -29.68 278.17 -7.43 -37.12 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -2.92 Total: -1.61 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -3.26 Total: -12.97 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.62 Total: -33.37 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -1.05 Total: -9.09 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.68 -7.43 -37.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527419250.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.174 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds