Wall clock time and date at job start Mon Mar 30 2020 06:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39067 * 120.13110 * 280.81459 * 3 2 1 5 5 C 1.40499 * 119.57411 * 179.68251 * 4 3 2 6 6 C 1.41272 * 120.09089 * 180.33654 * 5 4 3 7 7 H 1.07993 * 120.00247 * 204.80478 * 6 5 4 8 8 C 1.39859 * 119.99688 * 24.80465 * 6 5 4 9 9 N 1.30893 * 120.00217 * 17.82396 * 8 6 5 10 10 Si 1.86801 * 120.00068 * 197.82496 * 8 6 5 11 11 H 1.48497 * 109.47119 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47155 * 120.00088 * 10 8 6 13 13 H 1.48500 * 109.47290 * 240.00007 * 10 8 6 14 14 C 1.40944 * 119.82524 * 0.61162 * 5 4 3 15 15 C 1.36506 * 120.25762 * 359.67902 * 14 5 4 16 16 F 1.35095 * 119.78180 * 180.02562 * 15 14 5 17 17 C 1.39423 * 120.43380 * 0.02562 * 15 14 5 18 18 O 1.35539 * 119.91207 * 179.97438 * 17 15 14 19 19 C 1.42901 * 116.99889 * 270.01332 * 18 17 15 20 20 F 1.39894 * 109.47605 * 300.00585 * 19 18 17 21 21 F 1.39906 * 109.46633 * 60.00863 * 19 18 17 22 22 H 1.08003 * 120.21395 * 359.97438 * 4 3 2 23 23 H 0.97003 * 120.00243 * 179.97438 * 9 8 6 24 24 H 1.07998 * 119.87567 * 179.70862 * 14 5 4 25 25 H 1.08997 * 109.46625 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2662 -0.2247 1.1814 5 6 4.6711 -0.2282 1.1667 6 6 5.3913 -0.4630 2.3592 7 1 6.3987 -0.0883 2.4643 8 6 4.7997 -1.1809 3.4035 9 7 3.7479 -1.9250 3.1727 10 14 5.5105 -1.0777 5.1279 11 1 6.6907 -0.1765 5.1237 12 1 4.4820 -0.5431 6.0561 13 1 5.9242 -2.4321 5.5747 14 6 5.3601 0.0090 -0.0397 15 6 4.6678 0.2354 -1.1942 16 9 5.3380 0.4612 -2.3452 17 6 3.2735 0.2352 -1.1932 18 8 2.5968 0.4617 -2.3454 19 6 2.2731 1.8195 -2.6515 20 9 1.4713 2.3484 -1.6344 21 9 3.4507 2.5678 -2.7539 22 1 2.7319 -0.4007 2.1034 23 1 3.3377 -2.4232 3.8970 24 1 6.4400 0.0112 -0.0510 25 1 1.7339 1.8599 -3.5979 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575639029.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:23 Heat of formation + Delta-G solvation = -166.955487 kcal Electronic energy + Delta-G solvation = -18681.840550 eV Core-core repulsion = 15016.764695 eV Total energy + Delta-G solvation = -3665.075855 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.99588 -49.67263 -48.10919 -40.41244 -38.35243 -37.42922 -35.43650 -32.13880 -31.04110 -27.90939 -26.12565 -24.64649 -23.11635 -20.52196 -19.79229 -19.04579 -18.75419 -18.35076 -17.55648 -16.85955 -16.72360 -16.52490 -16.21880 -15.05919 -15.03066 -14.83391 -14.70715 -14.50267 -14.28266 -14.16471 -13.84301 -13.67801 -13.52003 -13.21761 -12.89309 -12.76634 -12.50706 -12.13766 -11.85917 -11.63037 -11.11361 -9.74619 -9.45390 -8.89661 -6.58128 -0.09074 0.48863 1.40343 1.46901 1.62063 1.62506 1.99496 2.17282 2.21515 2.66087 2.77924 2.90951 3.36123 3.67833 3.78700 3.83310 4.41857 4.53966 4.72587 4.87833 5.06144 5.19242 5.45440 5.69344 5.77209 6.12285 6.29787 6.49004 6.61220 6.61911 8.06760 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.027049 B = 0.007272 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.901422 B = 3849.319697 C = 4511.172013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.288 3.712 3 C 0.004 3.996 4 C -0.122 4.122 5 C 0.107 3.893 6 C -0.440 4.440 7 H 0.106 0.894 8 C 0.037 3.963 9 N -0.796 5.796 10 Si 0.990 3.010 11 H -0.249 1.249 12 H -0.266 1.266 13 H -0.265 1.265 14 C -0.243 4.243 15 C 0.138 3.862 16 F -0.144 7.144 17 C -0.092 4.092 18 O -0.323 6.323 19 C 0.381 3.619 20 F -0.222 7.222 21 F -0.215 7.215 22 H 0.129 0.871 23 H 0.301 0.699 24 H 0.136 0.864 25 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 3.297 -2.495 4.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.026 4.026 3 C 0.000 4.000 4 C -0.144 4.144 5 C 0.103 3.897 6 C -0.466 4.466 7 H 0.124 0.876 8 C -0.183 4.183 9 N -0.419 5.419 10 Si 0.809 3.191 11 H -0.171 1.171 12 H -0.191 1.191 13 H -0.190 1.190 14 C -0.264 4.264 15 C 0.118 3.882 16 F -0.123 7.123 17 C -0.139 4.139 18 O -0.242 6.242 19 C 0.292 3.708 20 F -0.204 7.204 21 F -0.197 7.197 22 H 0.147 0.853 23 H 0.112 0.888 24 H 0.154 0.846 25 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.080 3.030 -2.553 3.963 hybrid contribution 0.654 0.160 0.512 0.846 sum 0.734 3.190 -2.041 3.858 Atomic orbital electron populations 1.81019 1.12301 1.10744 1.09280 1.25716 0.92727 0.92234 0.91962 1.15976 0.83598 1.06221 0.94207 1.21434 0.94582 1.03224 0.95182 1.17580 0.91183 0.88363 0.92556 1.20159 1.02095 1.27241 0.97127 0.87608 1.26962 0.94208 0.91688 1.05461 1.69824 1.17814 1.17321 1.36898 0.85001 0.79627 0.79596 0.74835 1.17147 1.19083 1.18987 1.20887 1.00319 1.14646 0.90534 1.17212 0.88224 1.00688 0.82063 1.91402 1.80299 1.92271 1.48306 1.17644 0.88084 1.22375 0.85765 1.86621 1.73815 1.24884 1.38889 1.24589 0.77879 0.76767 0.91561 1.93025 1.74176 1.87186 1.66008 1.93032 1.52135 1.78002 1.96542 0.85311 0.88762 0.84624 0.76702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.20 18.54 19.00 0.35 -19.85 15 2 C 0.29 12.71 13.54 88.33 1.20 13.90 15 3 C 0.00 0.19 5.61 -21.26 -0.12 0.07 15 4 C -0.12 -5.62 8.39 23.02 0.19 -5.43 15 5 C 0.11 4.87 5.57 -21.32 -0.12 4.75 15 6 C -0.44 -19.10 9.03 23.41 0.21 -18.89 15 7 H 0.11 4.23 7.90 -2.91 -0.02 4.21 15 8 C 0.04 1.52 5.13 85.23 0.44 1.95 15 9 N -0.80 -34.94 10.97 21.81 0.24 -34.70 15 10 Si 0.99 31.09 29.59 68.60 2.03 33.12 15 11 H -0.25 -7.51 7.11 99.48 0.71 -6.80 15 12 H -0.27 -8.29 7.11 99.48 0.71 -7.59 15 13 H -0.27 -8.13 7.11 99.48 0.71 -7.42 15 14 C -0.24 -10.41 9.68 22.53 0.22 -10.19 15 15 C 0.14 5.94 6.96 22.15 0.15 6.09 15 16 F -0.14 -5.90 16.72 44.97 0.75 -5.15 15 17 C -0.09 -3.98 5.37 23.13 0.12 -3.85 15 18 O -0.32 -12.61 9.63 -88.43 -0.85 -13.46 15 19 C 0.38 12.13 6.35 113.37 0.72 12.85 15 20 F -0.22 -8.08 15.77 44.97 0.71 -7.37 15 21 F -0.22 -7.44 16.61 44.97 0.75 -6.69 15 22 H 0.13 6.11 6.17 -2.91 -0.02 6.09 15 23 H 0.30 11.84 8.30 -92.71 -0.77 11.07 15 24 H 0.14 5.25 8.06 -2.91 -0.02 5.22 15 25 H 0.22 4.25 8.14 -2.39 -0.02 4.23 15 Total: -1.00 -52.09 253.35 8.26 -43.83 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.27 Total: 9.02 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 3.02 Total: 1.25 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.59 Total: -54.55 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.85 Total: -13.46 kcal Atomic # 9 Polarization: -21.42 SS G_CDS: 2.21 Total: -19.21 kcal Atomic # 14 Polarization: 31.09 SS G_CDS: 2.03 Total: 33.12 kcal Total: -52.09 8.26 -43.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639029.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.124 kcal (2) G-P(sol) polarization free energy of solvation -52.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds