Wall clock time and date at job start Mon Mar 30 2020 06:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39106 * 120.02480 * 253.27778 * 3 2 1 5 5 C 1.40484 * 119.71611 * 179.75756 * 4 3 2 6 6 C 1.41366 * 120.10997 * 180.29494 * 5 4 3 7 7 H 1.07998 * 120.00071 * 204.76342 * 6 5 4 8 8 C 1.39888 * 120.00072 * 24.76003 * 6 5 4 9 9 N 1.30864 * 120.00096 * 17.80509 * 8 6 5 10 10 Si 1.86797 * 119.99701 * 197.79974 * 8 6 5 11 11 H 1.48497 * 109.47653 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47012 * 120.00554 * 10 8 6 13 13 H 1.48505 * 109.46935 * 240.00008 * 10 8 6 14 14 C 1.40811 * 119.77800 * 0.56090 * 5 4 3 15 15 C 1.37959 * 120.05309 * 359.69096 * 14 5 4 16 16 O 1.35958 * 119.85919 * 180.02562 * 15 14 5 17 17 C 1.42898 * 116.99764 * 359.97438 * 16 15 14 18 18 F 1.39901 * 109.47043 * 299.99391 * 17 16 15 19 19 F 1.39899 * 109.47596 * 60.00182 * 17 16 15 20 20 C 1.39269 * 120.27857 * 0.02562 * 15 14 5 21 21 F 1.35106 * 119.88523 * 180.02562 * 20 15 14 22 22 H 1.07990 * 120.14439 * 0.02562 * 4 3 2 23 23 H 0.96993 * 119.99850 * 179.97438 * 9 8 6 24 24 H 1.08005 * 119.97351 * 179.70648 * 14 5 4 25 25 H 1.09001 * 109.46693 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2639 0.3475 1.1535 5 6 4.6687 0.3410 1.1477 6 6 5.3843 0.6860 2.3170 7 1 6.3913 1.0686 2.2407 8 6 4.7879 0.5319 3.5730 9 7 3.7369 -0.2358 3.7086 10 14 5.4921 1.4220 5.0567 11 1 6.6721 2.2216 4.6403 12 1 4.4602 2.3241 5.6285 13 1 5.9032 0.4283 6.0809 14 6 5.3616 -0.0049 -0.0283 15 6 4.6621 -0.3422 -1.1685 16 8 5.3351 -0.6760 -2.3017 17 6 6.7625 -0.6552 -2.2383 18 9 7.1960 0.6337 -1.9096 19 9 7.1993 -1.5573 -1.2622 20 6 3.2694 -0.3423 -1.1637 21 9 2.5923 -0.6745 -2.2847 22 1 2.7266 0.6164 2.0508 23 1 3.3236 -0.3429 4.5795 24 1 6.4416 -0.0063 -0.0376 25 1 7.1733 -0.9403 -3.2068 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575639141.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:10 Heat of formation + Delta-G solvation = -149.523132 kcal Electronic energy + Delta-G solvation = -18522.152064 eV Core-core repulsion = 14857.832132 eV Total energy + Delta-G solvation = -3664.319932 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.93250 -47.73452 -46.92899 -38.87728 -37.09891 -35.63315 -33.72949 -30.40476 -29.36648 -26.00867 -25.19922 -22.94853 -21.51798 -19.41873 -17.95365 -17.50315 -17.04254 -16.76300 -16.10435 -15.62815 -15.13675 -14.84599 -14.29761 -13.84639 -13.51101 -13.32700 -13.05765 -12.98819 -12.89065 -12.62103 -12.43702 -12.20062 -12.02696 -11.81968 -11.39144 -11.20173 -10.96316 -10.43478 -10.31311 -10.12363 -9.42305 -7.94752 -7.51698 -7.17414 -4.76409 1.72837 2.32629 2.86620 2.92318 2.96931 2.98110 3.39824 3.66184 3.69912 3.83929 4.29494 4.64480 4.75773 4.96845 5.17230 5.30405 5.97274 6.04242 6.44403 6.53983 6.79040 7.02977 7.12102 7.27037 7.53565 7.73902 8.04800 8.20214 8.36956 8.42202 9.77116 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.009515 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.589402 B = 2942.037235 C = 4479.599322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.283 3.717 3 C -0.022 4.022 4 C -0.098 4.098 5 C 0.122 3.878 6 C -0.435 4.435 7 H 0.091 0.909 8 C 0.072 3.928 9 N -0.777 5.777 10 Si 0.917 3.083 11 H -0.256 1.256 12 H -0.268 1.268 13 H -0.271 1.271 14 C -0.255 4.255 15 C 0.107 3.893 16 O -0.325 6.325 17 C 0.414 3.586 18 F -0.201 7.201 19 F -0.199 7.199 20 C -0.021 4.021 21 F -0.153 7.153 22 H 0.140 0.860 23 H 0.290 0.710 24 H 0.124 0.876 25 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.113 0.410 -4.179 8.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.031 4.031 3 C -0.026 4.026 4 C -0.121 4.121 5 C 0.118 3.882 6 C -0.463 4.463 7 H 0.109 0.891 8 C -0.149 4.149 9 N -0.400 5.400 10 Si 0.741 3.259 11 H -0.179 1.179 12 H -0.193 1.193 13 H -0.196 1.196 14 C -0.276 4.276 15 C 0.064 3.936 16 O -0.243 6.243 17 C 0.324 3.676 18 F -0.183 7.183 19 F -0.181 7.181 20 C -0.044 4.044 21 F -0.132 7.132 22 H 0.158 0.842 23 H 0.101 0.899 24 H 0.142 0.858 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.105 0.250 -4.177 6.601 hybrid contribution 0.839 0.214 0.747 1.144 sum 5.944 0.464 -3.430 6.878 Atomic orbital electron populations 1.81061 1.12228 1.10610 1.09049 1.25677 0.92664 0.92478 0.92260 1.15568 0.83577 1.08814 0.94663 1.21464 0.94432 1.01107 0.95055 1.17251 0.90840 0.88131 0.91946 1.19712 1.01456 1.35580 0.89519 0.89081 1.26071 0.94205 0.93100 1.01491 1.69773 1.17353 1.25750 1.27135 0.86087 0.80287 0.79961 0.79614 1.17929 1.19281 1.19566 1.21339 0.99327 1.13415 0.93487 1.18235 0.89301 1.00701 0.85394 1.86524 1.17634 1.84612 1.35541 1.23145 0.79839 0.73662 0.90979 1.93083 1.89597 1.41245 1.94329 1.93095 1.89472 1.67971 1.67549 1.16048 0.85704 1.19312 0.83287 1.91340 1.80046 1.91693 1.50160 0.84203 0.89874 0.85798 0.81233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.20 18.54 41.84 0.78 -9.42 15 2 C 0.28 6.30 14.95 -22.47 -0.34 5.96 15 3 C -0.02 -0.48 5.73 -106.94 -0.61 -1.10 15 4 C -0.10 -2.27 8.39 -38.41 -0.32 -2.60 15 5 C 0.12 2.85 5.57 -106.89 -0.60 2.25 15 6 C -0.44 -10.00 9.04 -37.78 -0.34 -10.34 15 7 H 0.09 2.00 7.91 -52.49 -0.41 1.58 15 8 C 0.07 1.58 5.13 -17.35 -0.09 1.49 15 9 N -0.78 -17.71 10.97 55.54 0.61 -17.10 15 10 Si 0.92 16.43 29.59 -169.99 -5.03 11.40 15 11 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 12 H -0.27 -4.77 7.11 56.52 0.40 -4.37 15 13 H -0.27 -4.82 7.11 56.52 0.40 -4.42 15 14 C -0.25 -5.60 7.98 -38.71 -0.31 -5.90 15 15 C 0.11 2.29 6.48 -39.30 -0.25 2.04 15 16 O -0.32 -5.98 10.29 -19.61 -0.20 -6.18 15 17 C 0.41 5.86 5.97 101.05 0.60 6.46 15 18 F -0.20 -3.14 15.57 2.25 0.04 -3.10 15 19 F -0.20 -3.20 15.57 2.25 0.04 -3.16 15 20 C -0.02 -0.46 7.31 -38.49 -0.28 -0.74 15 21 F -0.15 -3.41 16.63 2.25 0.04 -3.38 15 22 H 0.14 3.29 6.16 -52.49 -0.32 2.97 15 23 H 0.29 5.98 8.30 -40.82 -0.34 5.64 15 24 H 0.12 2.60 5.04 -52.48 -0.26 2.33 15 25 H 0.17 1.38 8.14 -51.93 -0.42 0.96 15 LS Contribution 250.57 15.07 3.78 3.78 Total: -1.00 -26.02 250.57 -3.06 -29.08 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -0.56 Total: 0.57 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.54 Total: -2.47 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 1.38 Total: -26.52 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.20 Total: -6.18 kcal Atomic # 9 Polarization: -9.75 SS G_CDS: 0.11 Total: -9.64 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.03 Total: 11.40 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.02 -3.06 -29.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639141.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.444 kcal (2) G-P(sol) polarization free energy of solvation -26.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds