Wall clock time and date at job start Mon Mar 30 2020 06:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39106 * 120.02480 * 253.27778 * 3 2 1 5 5 C 1.40484 * 119.71611 * 179.75756 * 4 3 2 6 6 C 1.41366 * 120.10997 * 180.29494 * 5 4 3 7 7 H 1.07998 * 120.00071 * 204.76342 * 6 5 4 8 8 C 1.39888 * 120.00072 * 24.76003 * 6 5 4 9 9 N 1.30864 * 120.00096 * 17.80509 * 8 6 5 10 10 Si 1.86797 * 119.99701 * 197.79974 * 8 6 5 11 11 H 1.48497 * 109.47653 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47012 * 120.00554 * 10 8 6 13 13 H 1.48505 * 109.46935 * 240.00008 * 10 8 6 14 14 C 1.40811 * 119.77800 * 0.56090 * 5 4 3 15 15 C 1.37959 * 120.05309 * 359.69096 * 14 5 4 16 16 O 1.35958 * 119.85919 * 180.02562 * 15 14 5 17 17 C 1.42898 * 116.99764 * 359.97438 * 16 15 14 18 18 F 1.39901 * 109.47043 * 299.99391 * 17 16 15 19 19 F 1.39899 * 109.47596 * 60.00182 * 17 16 15 20 20 C 1.39269 * 120.27857 * 0.02562 * 15 14 5 21 21 F 1.35106 * 119.88523 * 180.02562 * 20 15 14 22 22 H 1.07990 * 120.14439 * 0.02562 * 4 3 2 23 23 H 0.96993 * 119.99850 * 179.97438 * 9 8 6 24 24 H 1.08005 * 119.97351 * 179.70648 * 14 5 4 25 25 H 1.09001 * 109.46693 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2639 0.3475 1.1535 5 6 4.6687 0.3410 1.1477 6 6 5.3843 0.6860 2.3170 7 1 6.3913 1.0686 2.2407 8 6 4.7879 0.5319 3.5730 9 7 3.7369 -0.2358 3.7086 10 14 5.4921 1.4220 5.0567 11 1 6.6721 2.2216 4.6403 12 1 4.4602 2.3241 5.6285 13 1 5.9032 0.4283 6.0809 14 6 5.3616 -0.0049 -0.0283 15 6 4.6621 -0.3422 -1.1685 16 8 5.3351 -0.6760 -2.3017 17 6 6.7625 -0.6552 -2.2383 18 9 7.1960 0.6337 -1.9096 19 9 7.1993 -1.5573 -1.2622 20 6 3.2694 -0.3423 -1.1637 21 9 2.5923 -0.6745 -2.2847 22 1 2.7266 0.6164 2.0508 23 1 3.3236 -0.3429 4.5795 24 1 6.4416 -0.0063 -0.0376 25 1 7.1733 -0.9403 -3.2068 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575639141.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:10 Heat of formation + Delta-G solvation = -163.293903 kcal Electronic energy + Delta-G solvation = -18522.749209 eV Core-core repulsion = 14857.832132 eV Total energy + Delta-G solvation = -3664.917077 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.13385 -49.48731 -48.13809 -40.46511 -38.73426 -37.39879 -35.42729 -32.15529 -31.02575 -27.54183 -26.68385 -24.63687 -23.17949 -20.98078 -19.28433 -18.73087 -18.63128 -18.44718 -17.81607 -17.17874 -16.72311 -16.54173 -15.83872 -15.15739 -15.10134 -14.69189 -14.61572 -14.49937 -14.41881 -14.35632 -14.09321 -13.73897 -13.66689 -13.29221 -12.90982 -12.78491 -12.56230 -12.11337 -11.88152 -11.75627 -11.08053 -9.70184 -9.22953 -8.83908 -6.53052 -0.04353 0.61494 1.41526 1.46178 1.46835 1.60605 1.81723 1.95561 2.18701 2.57742 2.69739 2.98908 3.37005 3.56400 3.68516 3.85210 4.25596 4.42747 4.69922 4.80615 5.11356 5.29016 5.43506 5.50940 5.78645 6.06646 6.28474 6.42689 6.63522 6.68489 8.13272 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.009515 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.589402 B = 2942.037235 C = 4479.599322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.288 3.712 3 C -0.020 4.020 4 C -0.110 4.110 5 C 0.102 3.898 6 C -0.456 4.456 7 H 0.096 0.904 8 C 0.039 3.961 9 N -0.805 5.805 10 Si 0.987 3.013 11 H -0.252 1.252 12 H -0.265 1.265 13 H -0.266 1.266 14 C -0.260 4.260 15 C 0.115 3.885 16 O -0.332 6.332 17 C 0.407 3.593 18 F -0.210 7.210 19 F -0.211 7.211 20 C -0.038 4.038 21 F -0.154 7.154 22 H 0.131 0.869 23 H 0.298 0.702 24 H 0.132 0.868 25 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.308 0.599 -4.189 9.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.026 4.026 3 C -0.025 4.025 4 C -0.133 4.133 5 C 0.099 3.901 6 C -0.484 4.484 7 H 0.114 0.886 8 C -0.180 4.180 9 N -0.428 5.428 10 Si 0.807 3.193 11 H -0.175 1.175 12 H -0.189 1.189 13 H -0.190 1.190 14 C -0.281 4.281 15 C 0.071 3.929 16 O -0.250 6.250 17 C 0.318 3.682 18 F -0.192 7.192 19 F -0.193 7.193 20 C -0.061 4.061 21 F -0.133 7.133 22 H 0.149 0.851 23 H 0.110 0.890 24 H 0.150 0.850 25 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.304 0.431 -4.209 7.592 hybrid contribution 0.511 0.116 0.696 0.872 sum 6.815 0.547 -3.512 7.686 Atomic orbital electron populations 1.81049 1.12276 1.10828 1.09305 1.25668 0.92620 0.92296 0.92028 1.15585 0.83567 1.08640 0.94718 1.21357 0.94541 1.02404 0.94973 1.17546 0.91162 0.88515 0.92871 1.19999 1.01971 1.36182 0.90199 0.88565 1.26873 0.94235 0.93136 1.03773 1.69805 1.18260 1.26392 1.28368 0.85056 0.79589 0.78700 0.75986 1.17466 1.18933 1.19050 1.21429 0.99698 1.13558 0.93376 1.18221 0.89237 0.99285 0.86109 1.86530 1.20155 1.84152 1.34149 1.24301 0.77764 0.72956 0.93183 1.93063 1.89412 1.42112 1.94582 1.93069 1.89327 1.68331 1.68560 1.16190 0.86417 1.20189 0.83260 1.91328 1.80122 1.91771 1.50096 0.85090 0.89030 0.85026 0.74438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.50 18.54 19.00 0.35 -20.15 15 2 C 0.29 12.83 14.95 88.33 1.32 14.15 15 3 C -0.02 -0.93 5.73 -21.36 -0.12 -1.05 15 4 C -0.11 -5.18 8.39 23.03 0.19 -4.99 15 5 C 0.10 4.82 5.57 -21.33 -0.12 4.70 15 6 C -0.46 -20.91 9.04 23.44 0.21 -20.70 15 7 H 0.10 4.18 7.91 -2.91 -0.02 4.16 15 8 C 0.04 1.66 5.13 85.24 0.44 2.10 15 9 N -0.80 -36.64 10.97 21.82 0.24 -36.40 15 10 Si 0.99 32.74 29.59 68.60 2.03 34.77 15 11 H -0.25 -8.10 7.11 99.48 0.71 -7.39 15 12 H -0.26 -8.60 7.11 99.48 0.71 -7.89 15 13 H -0.27 -8.58 7.11 99.48 0.71 -7.87 15 14 C -0.26 -11.33 7.98 22.83 0.18 -11.14 15 15 C 0.12 4.87 6.48 22.45 0.15 5.02 15 16 O -0.33 -11.60 10.29 -93.07 -0.96 -12.56 15 17 C 0.41 10.41 5.97 113.37 0.68 11.08 15 18 F -0.21 -6.14 15.57 44.97 0.70 -5.44 15 19 F -0.21 -6.37 15.57 44.97 0.70 -5.67 15 20 C -0.04 -1.69 7.31 22.98 0.17 -1.52 15 21 F -0.15 -6.78 16.63 44.97 0.75 -6.03 15 22 H 0.13 6.31 6.16 -2.92 -0.02 6.29 15 23 H 0.30 12.21 8.30 -92.71 -0.77 11.44 15 24 H 0.13 5.43 5.04 -2.91 -0.01 5.41 15 25 H 0.24 2.76 8.14 -2.39 -0.02 2.74 15 Total: -1.00 -55.12 250.57 8.18 -46.94 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.28 Total: 6.89 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 3.09 Total: -2.34 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.59 Total: -56.55 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.96 Total: -12.56 kcal Atomic # 9 Polarization: -19.29 SS G_CDS: 2.15 Total: -17.14 kcal Atomic # 14 Polarization: 32.74 SS G_CDS: 2.03 Total: 34.77 kcal Total: -55.12 8.18 -46.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639141.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.355 kcal (2) G-P(sol) polarization free energy of solvation -55.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds