Wall clock time and date at job start Mon Mar 30 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39227 * 120.53330 * 246.07302 * 3 2 1 5 5 C 1.38799 * 120.04854 * 180.28588 * 4 3 2 6 6 O 1.35696 * 119.40715 * 179.72565 * 5 4 3 7 7 C 1.42899 * 116.99831 * 180.02562 * 6 5 4 8 8 F 1.39899 * 109.47232 * 300.00282 * 7 6 5 9 9 F 1.39901 * 109.46978 * 60.00395 * 7 6 5 10 10 C 1.39221 * 121.18972 * 359.74668 * 5 4 3 11 11 C 1.37485 * 121.10429 * 359.95819 * 10 5 4 12 12 F 1.35101 * 120.07142 * 180.02562 * 11 10 5 13 13 C 1.41263 * 119.85473 * 0.02562 * 11 10 5 14 14 C 1.40485 * 120.56634 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00457 * 143.92957 * 14 13 11 16 16 C 1.40237 * 119.99842 * 323.93430 * 14 13 11 17 17 N 1.30702 * 120.00001 * 320.74875 * 16 14 13 18 18 Si 1.86800 * 119.99834 * 140.47029 * 16 14 13 19 19 H 1.48506 * 109.46697 * 180.27838 * 18 16 14 20 20 H 1.48502 * 109.46887 * 300.27270 * 18 16 14 21 21 H 1.48492 * 109.47107 * 60.27584 * 18 16 14 22 22 H 1.08000 * 119.98121 * 0.03241 * 4 3 2 23 23 H 1.09002 * 109.46777 * 180.02562 * 7 6 5 24 24 H 1.08001 * 119.44838 * 179.97438 * 10 5 4 25 25 H 0.96998 * 119.99784 * 353.91931 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 0.4873 1.0961 5 6 4.6630 0.4887 1.0830 6 8 5.3390 0.9712 2.1561 7 6 6.7662 0.9486 2.0875 8 9 7.2046 -0.3704 1.9290 9 9 7.1929 1.7160 0.9983 10 6 5.3741 0.0043 -0.0115 11 6 4.7249 -0.4929 -1.1167 12 9 5.4358 -0.9582 -2.1671 13 6 3.3129 -0.5162 -1.1516 14 6 2.6341 -1.0214 -2.2730 15 1 1.7141 -1.5722 -2.1446 16 6 3.1514 -0.8106 -3.5594 17 7 3.6960 0.3376 -3.8646 18 14 3.0689 -2.1736 -4.8341 19 1 3.6851 -1.7042 -6.1011 20 1 3.8062 -3.3625 -4.3359 21 1 1.6502 -2.5375 -5.0786 22 1 2.7433 0.8679 1.9557 23 1 7.1807 1.3609 3.0075 24 1 6.4538 0.0190 0.0081 25 1 3.6641 1.0728 -3.2327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575639392.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:01 Heat of formation + Delta-G solvation = -168.230739 kcal Electronic energy + Delta-G solvation = -18651.353135 eV Core-core repulsion = 14986.221981 eV Total energy + Delta-G solvation = -3665.131154 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.17099 -49.44073 -48.16890 -40.41900 -38.45911 -36.90213 -35.73295 -31.78496 -31.38982 -27.91537 -26.05056 -24.64360 -23.18804 -20.66356 -20.24149 -19.16750 -18.72003 -18.38561 -17.01368 -16.81855 -16.50248 -16.33093 -15.81130 -15.71889 -15.27104 -14.86920 -14.73144 -14.57476 -14.48411 -14.29830 -14.09761 -13.95285 -13.49921 -13.03192 -12.92626 -12.86642 -12.25423 -12.06018 -11.89338 -11.77076 -10.85601 -9.76950 -9.66469 -9.32107 -6.67291 -0.07009 0.57623 1.44976 1.52411 1.75276 1.76528 1.99147 2.01672 2.19983 2.46916 2.71324 3.10751 3.31869 3.58735 3.80149 3.85387 3.97118 4.22921 4.33071 4.82683 5.09552 5.21467 5.33496 5.38138 5.66718 5.72594 6.08451 6.36049 6.47994 6.75139 7.68574 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.008326 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.416445 B = 3362.236094 C = 4302.759272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.308 3.692 3 C -0.152 4.152 4 C -0.025 4.025 5 C -0.014 4.014 6 O -0.322 6.322 7 C 0.402 3.598 8 F -0.216 7.216 9 F -0.218 7.218 10 C -0.146 4.146 11 C -0.003 4.003 12 F -0.151 7.151 13 C 0.074 3.926 14 C -0.520 4.520 15 H 0.085 0.915 16 C 0.024 3.976 17 N -0.752 5.752 18 Si 1.099 2.901 19 H -0.264 1.264 20 H -0.261 1.261 21 H -0.255 1.255 22 H 0.149 0.851 23 H 0.238 0.762 24 H 0.132 0.868 25 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 0.673 7.412 10.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.002 4.002 3 C -0.158 4.158 4 C -0.046 4.046 5 C -0.057 4.057 6 O -0.240 6.240 7 C 0.312 3.688 8 F -0.198 7.198 9 F -0.200 7.200 10 C -0.166 4.166 11 C -0.023 4.023 12 F -0.129 7.129 13 C 0.068 3.932 14 C -0.545 4.545 15 H 0.103 0.897 16 C -0.201 4.201 17 N -0.370 5.370 18 Si 0.915 3.085 19 H -0.188 1.188 20 H -0.185 1.185 21 H -0.179 1.179 22 H 0.167 0.833 23 H 0.254 0.746 24 H 0.150 0.850 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.453 0.423 5.980 8.808 hybrid contribution 0.396 0.332 1.016 1.139 sum 6.849 0.754 6.996 9.819 Atomic orbital electron populations 1.81046 1.12673 1.13720 1.10758 1.25368 0.92250 0.91365 0.91200 1.16294 0.83545 1.16301 0.99642 1.20029 0.90302 0.97322 0.96971 1.17519 0.90824 1.09140 0.88176 1.86412 1.18727 1.79878 1.39011 1.24288 0.78882 0.74771 0.90813 1.93051 1.89519 1.40620 1.96645 1.93054 1.89875 1.75868 1.61175 1.21160 1.00265 1.01621 0.93578 1.17429 0.89079 1.09282 0.86532 1.91348 1.77958 1.87246 1.56391 1.18561 0.89791 0.91480 0.93332 1.20606 1.10105 1.30859 0.92910 0.89662 1.28406 0.89166 1.00921 1.01596 1.70541 1.26060 1.02148 1.38201 0.83243 0.79209 0.72680 0.73322 1.18789 1.18539 1.17916 0.83335 0.74632 0.84991 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.21 18.54 19.00 0.35 -22.86 15 2 C 0.31 13.85 14.46 88.33 1.28 15.12 15 3 C -0.15 -6.69 5.94 -19.62 -0.12 -6.80 15 4 C -0.03 -0.95 9.68 22.64 0.22 -0.73 15 5 C -0.01 -0.51 6.49 22.64 0.15 -0.36 15 6 O -0.32 -9.57 10.40 -90.16 -0.94 -10.51 15 7 C 0.40 9.15 5.98 113.37 0.68 9.82 15 8 F -0.22 -5.91 15.53 44.97 0.70 -5.21 15 9 F -0.22 -6.09 15.53 44.97 0.70 -5.40 15 10 C -0.15 -6.04 8.14 22.33 0.18 -5.86 15 11 C 0.00 -0.15 6.82 22.84 0.16 0.01 15 12 F -0.15 -7.45 15.03 44.97 0.68 -6.78 15 13 C 0.07 3.60 5.20 -19.82 -0.10 3.50 15 14 C -0.52 -25.93 8.09 23.30 0.19 -25.74 15 15 H 0.09 4.30 7.81 -2.91 -0.02 4.28 15 16 C 0.02 1.17 3.80 85.35 0.32 1.49 15 17 N -0.75 -37.67 12.68 21.88 0.28 -37.40 15 18 Si 1.10 41.20 30.06 68.60 2.06 43.26 15 19 H -0.26 -9.60 7.11 99.48 0.71 -8.90 15 20 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 21 H -0.26 -8.80 7.11 99.48 0.71 -8.10 15 22 H 0.15 4.71 8.06 -2.91 -0.02 4.68 15 23 H 0.24 2.14 8.14 -2.39 -0.02 2.12 15 24 H 0.13 5.13 4.94 -2.91 -0.01 5.12 15 25 H 0.29 14.85 8.16 -92.71 -0.76 14.09 15 Total: -1.00 -57.96 250.80 8.06 -49.90 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 1.28 Total: 4.54 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 2.95 Total: -9.55 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.63 Total: -60.25 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.94 Total: -10.51 kcal Atomic # 9 Polarization: -19.46 SS G_CDS: 2.07 Total: -17.38 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.06 Total: 43.26 kcal Total: -57.96 8.06 -49.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639392.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.332 kcal (2) G-P(sol) polarization free energy of solvation -57.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds