Wall clock time and date at job start Mon Mar 30 2020 06:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39887 * 120.03375 * 345.61954 * 3 2 1 5 5 C 1.38838 * 120.33368 * 179.97438 * 4 3 2 6 6 O 1.35939 * 119.80470 * 180.02562 * 5 4 3 7 7 C 1.42903 * 116.99928 * 359.97438 * 6 5 4 8 8 F 1.39897 * 109.46894 * 299.99742 * 7 6 5 9 9 F 1.39894 * 109.47442 * 60.00014 * 7 6 5 10 10 C 1.38189 * 120.39235 * 359.97438 * 5 4 3 11 11 C 1.40643 * 120.04395 * 0.02633 * 10 5 4 12 12 C 1.41315 * 120.16393 * 179.97438 * 11 10 5 13 13 H 1.07996 * 120.00313 * 204.72732 * 12 11 10 14 14 C 1.39930 * 119.99741 * 24.73068 * 12 11 10 15 15 N 1.30851 * 119.99936 * 17.83445 * 14 12 11 16 16 Si 1.86795 * 119.99939 * 197.83337 * 14 12 11 17 17 H 1.48504 * 109.47258 * 60.00120 * 16 14 12 18 18 H 1.48503 * 109.47049 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47305 * 299.99997 * 16 14 12 20 20 C 1.39415 * 120.02724 * 165.34061 * 3 2 1 21 21 F 1.35096 * 120.18754 * 0.02655 * 20 3 2 22 22 H 1.07996 * 119.82850 * 359.95061 * 4 3 2 23 23 H 1.09008 * 109.46912 * 180.02562 * 7 6 5 24 24 H 1.07998 * 119.97479 * 179.97438 * 10 5 4 25 25 H 0.97000 * 120.00056 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 -1.1721 0.3008 5 6 4.6570 -1.1787 0.3021 6 8 5.3270 -2.3246 0.5954 7 6 4.5389 -3.4791 0.8919 8 9 3.7324 -3.2198 2.0052 9 9 3.7308 -3.7872 -0.2077 10 6 5.3618 -0.0276 0.0059 11 6 4.6738 1.1606 -0.2988 12 6 5.3920 2.3394 -0.6015 13 1 4.9350 3.3054 -0.4454 14 6 6.6954 2.2550 -1.1037 15 7 7.1266 1.1321 -1.6187 16 14 7.8196 3.7453 -1.0387 17 1 8.0058 4.1638 0.3739 18 1 9.1371 3.3976 -1.6292 19 1 7.2100 4.8592 -1.8087 20 6 3.2651 1.1687 -0.3055 21 9 2.5935 2.3029 -0.6017 22 1 2.7268 -2.0769 0.5335 23 1 5.1958 -4.3217 1.1080 24 1 6.4417 -0.0402 0.0093 25 1 8.0302 1.0734 -1.9665 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575639803.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:43 Heat of formation + Delta-G solvation = -150.202387 kcal Electronic energy + Delta-G solvation = -18485.529263 eV Core-core repulsion = 14821.179876 eV Total energy + Delta-G solvation = -3664.349386 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.96669 -47.62017 -46.96504 -38.94844 -36.81988 -35.73631 -33.85575 -30.40940 -29.24520 -25.84272 -25.48905 -23.04463 -21.24087 -19.44326 -18.00384 -17.51791 -17.20388 -16.40947 -16.26759 -15.80619 -14.74176 -14.55452 -14.43030 -13.96579 -13.41380 -13.22612 -13.20341 -12.96047 -12.86323 -12.86035 -12.59888 -12.37734 -11.91772 -11.67859 -11.42895 -11.19517 -10.86199 -10.58361 -10.30974 -10.01046 -9.46091 -8.01376 -7.43130 -7.10758 -4.77664 1.73215 2.29340 2.91957 2.93630 2.97401 3.12936 3.27718 3.68356 3.72451 3.84978 4.28726 4.56565 4.69489 4.93937 5.13843 5.41192 5.94099 6.04799 6.31017 6.72085 6.81704 6.86931 7.16266 7.29320 7.52293 7.78760 8.08098 8.16898 8.34033 8.38888 9.79356 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.008229 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.573170 B = 3401.974677 C = 4585.521989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.279 3.721 3 C -0.011 4.011 4 C -0.245 4.245 5 C 0.111 3.889 6 O -0.321 6.321 7 C 0.410 3.590 8 F -0.204 7.204 9 F -0.203 7.203 10 C -0.142 4.142 11 C 0.105 3.895 12 C -0.437 4.437 13 H 0.093 0.907 14 C 0.075 3.925 15 N -0.772 5.772 16 Si 0.920 3.080 17 H -0.259 1.259 18 H -0.275 1.275 19 H -0.261 1.261 20 C 0.013 3.987 21 F -0.148 7.148 22 H 0.120 0.880 23 H 0.170 0.830 24 H 0.143 0.857 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -5.593 3.030 7.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.035 4.035 3 C -0.016 4.016 4 C -0.267 4.267 5 C 0.069 3.931 6 O -0.239 6.239 7 C 0.319 3.681 8 F -0.186 7.186 9 F -0.185 7.185 10 C -0.163 4.163 11 C 0.101 3.899 12 C -0.464 4.464 13 H 0.111 0.889 14 C -0.147 4.147 15 N -0.395 5.395 16 Si 0.743 3.257 17 H -0.183 1.183 18 H -0.199 1.199 19 H -0.186 1.186 20 C -0.010 4.010 21 F -0.127 7.127 22 H 0.138 0.862 23 H 0.187 0.813 24 H 0.161 0.839 25 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.329 -5.683 2.886 6.786 hybrid contribution 0.491 0.575 -0.127 0.767 sum 2.820 -5.108 2.759 6.454 Atomic orbital electron populations 1.81070 1.12243 1.08911 1.10679 1.25822 0.92823 0.92378 0.92504 1.15380 0.83258 0.94551 1.08367 1.20428 0.92145 0.97481 1.16692 1.18444 0.89920 0.85045 0.99716 1.86581 1.35295 1.17527 1.84504 1.23183 0.81849 0.90066 0.73000 1.93071 1.76491 1.94916 1.54124 1.93075 1.76350 1.93144 1.55917 1.20584 1.00763 0.89049 1.05876 1.17169 0.87911 0.93847 0.90975 1.19572 0.97537 0.93894 1.35397 0.88894 1.26015 0.98459 0.98083 0.92099 1.69775 1.18537 1.27019 1.24198 0.86147 0.78433 0.80938 0.80191 1.18311 1.19943 1.18553 1.17780 0.90064 0.81070 1.12073 1.91336 1.80303 1.49428 1.91588 0.86190 0.81321 0.83915 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.98 18.54 41.84 0.78 -9.21 15 2 C 0.28 6.08 14.95 -22.48 -0.34 5.74 15 3 C -0.01 -0.24 5.73 -106.92 -0.61 -0.85 15 4 C -0.25 -5.14 7.96 -38.74 -0.31 -5.45 15 5 C 0.11 2.34 6.47 -39.38 -0.25 2.09 15 6 O -0.32 -5.77 10.42 -19.55 -0.20 -5.97 15 7 C 0.41 5.67 5.98 101.05 0.60 6.27 15 8 F -0.20 -3.12 15.57 2.25 0.04 -3.08 15 9 F -0.20 -3.18 15.56 2.25 0.04 -3.15 15 10 C -0.14 -3.25 8.61 -38.69 -0.33 -3.59 15 11 C 0.10 2.52 5.57 -106.82 -0.60 1.93 15 12 C -0.44 -10.39 8.77 -37.78 -0.33 -10.72 15 13 H 0.09 2.16 7.74 -52.49 -0.41 1.75 15 14 C 0.07 1.66 5.13 -17.34 -0.09 1.57 15 15 N -0.77 -17.49 10.97 55.55 0.61 -16.88 15 16 Si 0.92 16.58 29.59 -169.99 -5.03 11.55 15 17 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 18 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 19 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 20 C 0.01 0.31 7.28 -38.15 -0.28 0.04 15 21 F -0.15 -3.50 16.24 2.25 0.04 -3.47 15 22 H 0.12 2.37 5.04 -52.49 -0.26 2.10 15 23 H 0.17 1.35 8.14 -51.92 -0.42 0.93 15 24 H 0.14 3.32 6.16 -52.49 -0.32 3.00 15 25 H 0.29 5.92 8.30 -40.82 -0.34 5.58 15 LS Contribution 250.05 15.07 3.77 3.77 Total: -1.00 -25.94 250.05 -3.06 -29.00 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -0.55 Total: 0.40 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.53 Total: -2.97 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 1.38 Total: -26.09 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.20 Total: -5.97 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 0.11 Total: -9.70 kcal Atomic # 14 Polarization: 16.58 SS G_CDS: -5.03 Total: 11.55 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -25.94 -3.06 -29.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639803.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.203 kcal (2) G-P(sol) polarization free energy of solvation -25.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds