Wall clock time and date at job start Mon Mar 30 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39887 * 120.03375 * 345.61954 * 3 2 1 5 5 C 1.38838 * 120.33368 * 179.97438 * 4 3 2 6 6 O 1.35939 * 119.80470 * 180.02562 * 5 4 3 7 7 C 1.42903 * 116.99928 * 359.97438 * 6 5 4 8 8 F 1.39897 * 109.46894 * 299.99742 * 7 6 5 9 9 F 1.39894 * 109.47442 * 60.00014 * 7 6 5 10 10 C 1.38189 * 120.39235 * 359.97438 * 5 4 3 11 11 C 1.40643 * 120.04395 * 0.02633 * 10 5 4 12 12 C 1.41315 * 120.16393 * 179.97438 * 11 10 5 13 13 H 1.07996 * 120.00313 * 204.72732 * 12 11 10 14 14 C 1.39930 * 119.99741 * 24.73068 * 12 11 10 15 15 N 1.30851 * 119.99936 * 17.83445 * 14 12 11 16 16 Si 1.86795 * 119.99939 * 197.83337 * 14 12 11 17 17 H 1.48504 * 109.47258 * 60.00120 * 16 14 12 18 18 H 1.48503 * 109.47049 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47305 * 299.99997 * 16 14 12 20 20 C 1.39415 * 120.02724 * 165.34061 * 3 2 1 21 21 F 1.35096 * 120.18754 * 0.02655 * 20 3 2 22 22 H 1.07996 * 119.82850 * 359.95061 * 4 3 2 23 23 H 1.09008 * 109.46912 * 180.02562 * 7 6 5 24 24 H 1.07998 * 119.97479 * 179.97438 * 10 5 4 25 25 H 0.97000 * 120.00056 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 -1.1721 0.3008 5 6 4.6570 -1.1787 0.3021 6 8 5.3270 -2.3246 0.5954 7 6 4.5389 -3.4791 0.8919 8 9 3.7324 -3.2198 2.0052 9 9 3.7308 -3.7872 -0.2077 10 6 5.3618 -0.0276 0.0059 11 6 4.6738 1.1606 -0.2988 12 6 5.3920 2.3394 -0.6015 13 1 4.9350 3.3054 -0.4454 14 6 6.6954 2.2550 -1.1037 15 7 7.1266 1.1321 -1.6187 16 14 7.8196 3.7453 -1.0387 17 1 8.0058 4.1638 0.3739 18 1 9.1371 3.3976 -1.6292 19 1 7.2100 4.8592 -1.8087 20 6 3.2651 1.1687 -0.3055 21 9 2.5935 2.3029 -0.6017 22 1 2.7268 -2.0769 0.5335 23 1 5.1958 -4.3217 1.1080 24 1 6.4417 -0.0402 0.0093 25 1 8.0302 1.0734 -1.9665 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575639803.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:42 Heat of formation + Delta-G solvation = -164.050056 kcal Electronic energy + Delta-G solvation = -18486.129743 eV Core-core repulsion = 14821.179876 eV Total energy + Delta-G solvation = -3664.949866 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.14521 -49.45058 -48.14927 -40.53608 -38.45107 -37.47203 -35.56183 -32.16146 -30.90044 -27.56803 -26.75572 -24.78142 -22.87202 -21.03126 -19.34659 -18.72144 -18.71202 -18.12473 -18.00638 -17.41687 -16.41523 -16.27029 -15.88737 -15.31430 -14.80394 -14.76939 -14.60218 -14.56818 -14.45445 -14.43596 -14.30945 -13.96652 -13.55969 -13.16786 -12.96056 -12.73048 -12.46935 -12.13628 -11.98301 -11.67859 -11.11024 -9.78009 -9.14238 -8.78105 -6.56975 -0.04303 0.58243 1.44126 1.48317 1.50571 1.57557 1.89724 1.97777 2.20752 2.58085 2.68458 2.87049 3.30012 3.64446 3.71469 3.86769 4.23444 4.41269 4.56161 4.98678 5.13809 5.14799 5.43470 5.55375 5.75004 6.09209 6.31098 6.43410 6.57770 6.64414 8.15394 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.008229 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.573170 B = 3401.974677 C = 4585.521989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.284 3.716 3 C -0.009 4.009 4 C -0.239 4.239 5 C 0.121 3.879 6 O -0.327 6.327 7 C 0.402 3.598 8 F -0.212 7.212 9 F -0.214 7.214 10 C -0.155 4.155 11 C 0.087 3.913 12 C -0.467 4.467 13 H 0.087 0.913 14 C 0.043 3.957 15 N -0.795 5.795 16 Si 0.988 3.012 17 H -0.256 1.256 18 H -0.261 1.261 19 H -0.263 1.263 20 C -0.014 4.014 21 F -0.155 7.155 22 H 0.135 0.865 23 H 0.238 0.762 24 H 0.136 0.864 25 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -6.435 3.341 8.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.030 4.030 3 C -0.014 4.014 4 C -0.262 4.262 5 C 0.078 3.922 6 O -0.245 6.245 7 C 0.313 3.687 8 F -0.194 7.194 9 F -0.196 7.196 10 C -0.176 4.176 11 C 0.083 3.917 12 C -0.494 4.494 13 H 0.105 0.895 14 C -0.176 4.176 15 N -0.418 5.418 16 Si 0.807 3.193 17 H -0.180 1.180 18 H -0.185 1.185 19 H -0.187 1.187 20 C -0.037 4.037 21 F -0.134 7.134 22 H 0.153 0.847 23 H 0.253 0.747 24 H 0.154 0.846 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.287 -6.554 3.201 8.000 hybrid contribution 0.161 0.705 -0.209 0.753 sum 3.448 -5.849 2.992 7.420 Atomic orbital electron populations 1.81067 1.12234 1.09074 1.10772 1.25738 0.92675 0.92218 0.92375 1.15445 0.83380 0.94510 1.08020 1.20615 0.92267 0.97498 1.15781 1.18398 0.89834 0.85853 0.98162 1.86585 1.36234 1.17521 1.84135 1.24306 0.82352 0.89926 0.72085 1.93055 1.76935 1.94960 1.54464 1.93055 1.76866 1.92988 1.56642 1.20552 1.00503 0.89703 1.06867 1.17441 0.88332 0.94633 0.91294 1.19790 0.98999 0.93715 1.36927 0.89456 1.26768 0.98966 1.00848 0.91043 1.69784 1.19406 1.28594 1.24062 0.85140 0.76758 0.77185 0.80169 1.18018 1.18534 1.18703 1.17914 0.90255 0.81445 1.14037 1.91300 1.80362 1.49865 1.91869 0.84708 0.74668 0.84593 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.69 18.54 19.00 0.35 -19.34 15 2 C 0.28 12.23 14.95 88.33 1.32 13.55 15 3 C -0.01 -0.40 5.73 -21.35 -0.12 -0.52 15 4 C -0.24 -9.82 7.96 22.81 0.18 -9.63 15 5 C 0.12 5.00 6.47 22.40 0.14 5.15 15 6 O -0.33 -11.07 10.42 -92.86 -0.97 -12.04 15 7 C 0.40 9.86 5.98 113.37 0.68 10.53 15 8 F -0.21 -5.93 15.57 44.97 0.70 -5.23 15 9 F -0.21 -6.15 15.56 44.97 0.70 -5.45 15 10 C -0.16 -7.18 8.61 22.85 0.20 -6.98 15 11 C 0.09 4.26 5.57 -21.29 -0.12 4.14 15 12 C -0.47 -22.67 8.77 23.44 0.21 -22.47 15 13 H 0.09 4.18 7.74 -2.91 -0.02 4.16 15 14 C 0.04 1.91 5.13 85.25 0.44 2.35 15 15 N -0.80 -35.87 10.97 21.83 0.24 -35.63 15 16 Si 0.99 33.40 29.59 68.60 2.03 35.43 15 17 H -0.26 -8.49 7.11 99.48 0.71 -7.79 15 18 H -0.26 -8.21 7.11 99.48 0.71 -7.50 15 19 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 20 C -0.01 -0.65 7.28 23.20 0.17 -0.48 15 21 F -0.15 -7.53 16.24 44.97 0.73 -6.80 15 22 H 0.14 5.09 5.04 -2.91 -0.01 5.07 15 23 H 0.24 2.59 8.14 -2.38 -0.02 2.57 15 24 H 0.14 6.40 6.16 -2.91 -0.02 6.38 15 25 H 0.30 12.04 8.30 -92.71 -0.77 11.27 15 Total: -1.00 -55.59 250.05 8.15 -47.43 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.28 Total: 5.99 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 3.09 Total: -4.36 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.59 Total: -54.97 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.97 Total: -12.04 kcal Atomic # 9 Polarization: -19.61 SS G_CDS: 2.13 Total: -17.48 kcal Atomic # 14 Polarization: 33.40 SS G_CDS: 2.03 Total: 35.43 kcal Total: -55.59 8.15 -47.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639803.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.617 kcal (2) G-P(sol) polarization free energy of solvation -55.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds