Wall clock time and date at job start Mon Mar 30 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40295 * 119.92621 * 338.56091 * 3 2 1 5 5 C 1.36002 * 120.34576 * 180.02562 * 4 3 2 6 6 C 1.41076 * 120.18435 * 0.02562 * 5 4 3 7 7 C 1.40939 * 120.07614 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00120 * 206.02149 * 7 6 5 9 9 C 1.40162 * 120.00055 * 25.74758 * 7 6 5 10 10 N 1.30696 * 120.00208 * 16.72080 * 9 7 6 11 11 Si 1.86804 * 119.99768 * 196.72174 * 9 7 6 12 12 H 1.48496 * 109.47408 * 59.99991 * 11 9 7 13 13 H 1.48508 * 109.46785 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47176 * 299.99694 * 11 9 7 15 15 C 1.40958 * 119.84286 * 0.22827 * 6 5 4 16 16 F 1.35100 * 120.16888 * 179.72711 * 15 6 5 17 17 C 1.38218 * 119.66057 * 359.49532 * 15 6 5 18 18 O 1.35808 * 120.09197 * 180.22911 * 17 15 6 19 19 C 1.42905 * 117.00100 * 270.32232 * 18 17 15 20 20 F 1.39906 * 109.46836 * 300.00152 * 19 18 17 21 21 F 1.39905 * 109.46913 * 59.99393 * 19 18 17 22 22 H 1.07997 * 119.83242 * 0.02562 * 4 3 2 23 23 H 1.08000 * 119.91227 * 179.97438 * 5 4 3 24 24 H 0.97000 * 120.00122 * 180.02562 * 10 9 7 25 25 H 1.08996 * 109.47307 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 -1.1308 0.4444 5 6 4.6284 -1.1393 0.4486 6 6 5.3461 -0.0083 0.0057 7 6 6.7555 -0.0194 0.0115 8 1 7.3025 0.9086 0.0889 9 6 7.4471 -1.2352 -0.0774 10 7 6.8284 -2.3106 -0.4883 11 14 9.2534 -1.3186 0.3916 12 1 9.4152 -0.9169 1.8120 13 1 9.7484 -2.7069 0.2098 14 1 10.0328 -0.3983 -0.4750 15 6 4.6504 1.1347 -0.4374 16 9 5.3311 2.2234 -0.8576 17 6 3.2682 1.1342 -0.4443 18 8 2.5890 2.2290 -0.8738 19 6 2.2647 3.2171 0.1062 20 9 1.4636 2.6434 1.0994 21 9 3.4420 3.7069 0.6820 22 1 2.7249 -1.9996 0.7851 23 1 5.1605 -2.0139 0.7925 24 1 7.3070 -3.1520 -0.5495 25 1 1.7247 4.0363 -0.3685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575639918.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:46 Heat of formation + Delta-G solvation = -154.564394 kcal Electronic energy + Delta-G solvation = -18783.278643 eV Core-core repulsion = 15118.740106 eV Total energy + Delta-G solvation = -3664.538537 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.67714 -47.52502 -46.78903 -38.82489 -36.78816 -35.54355 -33.91660 -30.36116 -29.12028 -26.36111 -25.44707 -22.26191 -21.37051 -18.76894 -18.18456 -17.82589 -17.36609 -16.96434 -15.92073 -15.44562 -14.98760 -14.51160 -14.23909 -13.64717 -13.61416 -13.18112 -13.01008 -12.81239 -12.67056 -12.64197 -12.12219 -12.01045 -11.94768 -11.86759 -11.43396 -11.04967 -10.75382 -10.57429 -10.37644 -9.97749 -9.59547 -7.91713 -7.78913 -7.31674 -4.89550 1.64422 2.23320 2.81503 2.84265 2.87327 3.51169 3.56743 3.57313 3.75140 3.99753 4.38507 4.82134 4.92284 5.08835 5.10335 5.58447 5.98302 6.32214 6.33258 6.57006 6.65894 6.98595 7.19118 7.39979 7.54589 7.69182 8.04615 8.18916 8.29546 8.46915 9.58838 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.007520 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.181289 B = 3722.639329 C = 4443.094804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.290 3.710 3 C -0.170 4.170 4 C -0.046 4.046 5 C -0.149 4.149 6 C 0.103 3.897 7 C -0.413 4.413 8 H 0.095 0.905 9 C 0.072 3.928 10 N -0.758 5.758 11 Si 0.923 3.077 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.259 1.259 15 C -0.020 4.020 16 F -0.144 7.144 17 C 0.113 3.887 18 O -0.332 6.332 19 C 0.405 3.595 20 F -0.204 7.204 21 F -0.201 7.201 22 H 0.112 0.888 23 H 0.137 0.863 24 H 0.295 0.705 25 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 3.410 1.498 3.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.021 4.021 3 C -0.176 4.176 4 C -0.067 4.067 5 C -0.168 4.168 6 C 0.099 3.901 7 C -0.440 4.440 8 H 0.113 0.887 9 C -0.152 4.152 10 N -0.379 5.379 11 Si 0.746 3.254 12 H -0.181 1.181 13 H -0.197 1.197 14 H -0.183 1.183 15 C -0.042 4.042 16 F -0.123 7.123 17 C 0.067 3.933 18 O -0.252 6.252 19 C 0.315 3.685 20 F -0.186 7.186 21 F -0.183 7.183 22 H 0.130 0.870 23 H 0.154 0.846 24 H 0.106 0.894 25 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.766 3.219 1.273 3.546 hybrid contribution 1.352 0.069 0.274 1.381 sum 0.586 3.288 1.547 3.681 Atomic orbital electron populations 1.81040 1.12338 1.09457 1.13570 1.25608 0.92520 0.92287 0.91637 1.15400 0.83681 0.97777 1.20741 1.20310 0.94402 0.94830 0.97159 1.20861 0.91958 0.99992 1.04015 1.17662 0.94019 0.89498 0.88959 1.19822 0.91094 0.94662 1.38399 0.88678 1.26163 1.02524 0.94586 0.91922 1.69702 1.39726 1.01410 1.27068 0.86075 0.79760 0.78768 0.80814 1.18084 1.19707 1.18290 1.17710 0.87183 0.87762 1.11509 1.91333 1.79970 1.52490 1.88485 1.18101 0.88211 0.85340 1.01621 1.86555 1.74285 1.30166 1.34159 1.23418 0.78098 0.88297 0.78668 1.93085 1.73828 1.86528 1.65151 1.93093 1.51158 1.87804 1.86233 0.87045 0.84570 0.89383 0.81788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.72 18.54 41.84 0.78 -9.94 15 2 C 0.29 6.28 13.53 -22.47 -0.30 5.97 15 3 C -0.17 -3.68 5.65 -106.36 -0.60 -4.28 15 4 C -0.05 -0.95 9.67 -39.61 -0.38 -1.33 15 5 C -0.15 -3.27 8.60 -39.31 -0.34 -3.61 15 6 C 0.10 2.44 5.57 -106.77 -0.59 1.84 15 7 C -0.41 -9.52 8.76 -37.84 -0.33 -9.85 15 8 H 0.10 2.15 7.73 -52.49 -0.41 1.74 15 9 C 0.07 1.52 5.15 -17.31 -0.09 1.43 15 10 N -0.76 -16.30 10.95 55.56 0.61 -15.69 15 11 Si 0.92 15.80 29.59 -169.99 -5.03 10.77 15 12 H -0.26 -4.38 7.11 56.52 0.40 -3.98 15 13 H -0.27 -4.51 7.11 56.52 0.40 -4.11 15 14 H -0.26 -4.46 7.11 56.52 0.40 -4.06 15 15 C -0.02 -0.48 7.01 -38.56 -0.27 -0.75 15 16 F -0.14 -3.38 16.17 2.25 0.04 -3.34 15 17 C 0.11 2.52 5.34 -38.76 -0.21 2.31 15 18 O -0.33 -6.74 9.65 -19.14 -0.18 -6.92 15 19 C 0.40 6.78 6.35 101.05 0.64 7.43 15 20 F -0.20 -3.78 15.78 2.25 0.04 -3.74 15 21 F -0.20 -3.67 16.59 2.25 0.04 -3.63 15 22 H 0.11 2.01 8.06 -52.49 -0.42 1.58 15 23 H 0.14 2.96 6.18 -52.49 -0.32 2.63 15 24 H 0.29 5.65 8.29 -40.82 -0.34 5.32 15 25 H 0.17 1.84 8.14 -51.93 -0.42 1.42 15 LS Contribution 252.61 15.07 3.81 3.81 Total: -1.00 -25.90 252.61 -3.10 -29.00 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -0.71 Total: 0.55 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.48 Total: -0.85 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 1.38 Total: -25.64 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.18 Total: -6.92 kcal Atomic # 9 Polarization: -10.83 SS G_CDS: 0.11 Total: -10.72 kcal Atomic # 14 Polarization: 15.80 SS G_CDS: -5.03 Total: 10.77 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -25.90 -3.10 -29.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639918.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.567 kcal (2) G-P(sol) polarization free energy of solvation -25.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds