Wall clock time and date at job start Mon Mar 30 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40407 * 119.96050 * 181.04740 * 3 2 1 5 5 F 1.35102 * 119.89399 * 359.97438 * 4 3 2 6 6 C 1.36387 * 120.21870 * 179.97438 * 4 3 2 7 7 C 1.40940 * 120.13470 * 359.97438 * 6 4 3 8 8 C 1.41063 * 120.03591 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00076 * 154.34604 * 8 7 6 10 10 C 1.40149 * 120.00161 * 334.34098 * 8 7 6 11 11 N 1.30697 * 119.99979 * 343.19226 * 10 8 7 12 12 Si 1.86796 * 120.00133 * 163.18729 * 10 8 7 13 13 H 1.48492 * 109.47099 * 94.96721 * 12 10 8 14 14 H 1.48500 * 109.47395 * 214.96982 * 12 10 8 15 15 H 1.48499 * 109.47342 * 334.96619 * 12 10 8 16 16 C 1.40775 * 119.92469 * 359.97438 * 7 6 4 17 17 C 1.37847 * 119.78405 * 359.77095 * 16 7 6 18 18 O 1.35741 * 120.06606 * 180.25192 * 17 16 7 19 19 C 1.42898 * 117.00545 * 0.23452 * 18 17 16 20 20 F 1.39903 * 109.46876 * 300.00148 * 19 18 17 21 21 F 1.39898 * 109.46760 * 60.00161 * 19 18 17 22 22 H 1.07999 * 119.93276 * 179.97438 * 6 4 3 23 23 H 0.96995 * 120.00454 * 179.97438 * 11 10 8 24 24 H 1.08001 * 120.11026 * 179.97438 * 16 7 6 25 25 H 1.09001 * 109.47129 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 1.2172 0.0222 5 9 2.5896 2.3850 0.0431 6 6 4.6325 1.2239 0.0229 7 6 5.3461 0.0087 0.0017 8 6 6.7567 0.0181 0.0019 9 1 7.3023 -0.8282 0.3922 10 6 7.4501 1.1258 -0.5045 11 7 6.8328 1.9918 -1.2642 12 14 9.2566 1.3645 -0.0935 13 1 10.0913 0.7914 -1.1797 14 1 9.5464 2.8148 0.0407 15 1 9.5684 0.6772 1.1855 16 6 4.6495 -1.2144 -0.0195 17 6 3.2711 -1.2176 -0.0148 18 8 2.5936 -2.3938 -0.0300 19 6 3.3731 -3.5913 -0.0455 20 9 4.1803 -3.6076 -1.1880 21 9 4.1800 -3.6372 1.0964 22 1 5.1667 2.1624 0.0396 23 1 7.3126 2.7586 -1.6144 24 1 5.1933 -2.1474 -0.0362 25 1 2.7100 -4.4564 -0.0571 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575640276.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:37 Heat of formation + Delta-G solvation = -153.414058 kcal Electronic energy + Delta-G solvation = -18535.206843 eV Core-core repulsion = 14870.718188 eV Total energy + Delta-G solvation = -3664.488655 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.95178 -47.99403 -46.94820 -39.09330 -36.72146 -35.54021 -33.82691 -30.42044 -29.04481 -26.49161 -25.67436 -22.19103 -21.52845 -18.97761 -18.43752 -17.52330 -17.32109 -16.99126 -16.15653 -15.27273 -15.01286 -14.79614 -14.20833 -13.99239 -13.74510 -13.46837 -13.25326 -13.18210 -12.61662 -12.43715 -12.37587 -12.17138 -12.00140 -11.76615 -11.37203 -11.15592 -10.91766 -10.40111 -10.31489 -10.26452 -9.50534 -7.87386 -7.58038 -7.28881 -4.96572 1.88841 2.48407 2.78522 2.84431 2.90278 2.98519 3.56938 3.63090 3.76900 3.80648 4.35947 4.63111 4.93424 5.05081 5.16379 5.38371 5.97313 6.16776 6.37198 6.49450 6.68701 7.05023 7.21928 7.32658 7.54647 7.67921 8.04851 8.28484 8.29947 8.52835 9.60492 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.008772 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.288298 B = 3191.387109 C = 4481.433548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.295 3.705 3 C -0.232 4.232 4 C 0.179 3.821 5 F -0.150 7.150 6 C -0.212 4.212 7 C 0.162 3.838 8 C -0.414 4.414 9 H 0.095 0.905 10 C 0.070 3.930 11 N -0.754 5.754 12 Si 0.921 3.079 13 H -0.264 1.264 14 H -0.270 1.270 15 H -0.254 1.254 16 C -0.302 4.302 17 C 0.201 3.799 18 O -0.327 6.327 19 C 0.415 3.585 20 F -0.198 7.198 21 F -0.199 7.199 22 H 0.139 0.861 23 H 0.294 0.706 24 H 0.123 0.877 25 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 -5.833 1.315 6.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.016 4.016 3 C -0.239 4.239 4 C 0.158 3.842 5 F -0.129 7.129 6 C -0.232 4.232 7 C 0.157 3.843 8 C -0.440 4.440 9 H 0.113 0.887 10 C -0.154 4.154 11 N -0.375 5.375 12 Si 0.743 3.257 13 H -0.189 1.189 14 H -0.194 1.194 15 H -0.177 1.177 16 C -0.322 4.322 17 C 0.155 3.845 18 O -0.245 6.245 19 C 0.325 3.675 20 F -0.179 7.179 21 F -0.181 7.181 22 H 0.157 0.843 23 H 0.106 0.894 24 H 0.141 0.859 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.069 -5.593 1.159 5.811 hybrid contribution 1.421 0.297 -0.010 1.452 sum 2.490 -5.296 1.150 5.964 Atomic orbital electron populations 1.81024 1.12271 1.08535 1.15178 1.25389 0.92319 0.92494 0.91391 1.14415 0.83664 0.90684 1.35159 1.16744 0.89588 0.78286 0.99623 1.91405 1.80938 1.46588 1.93936 1.20953 0.89949 1.00811 1.11468 1.17169 0.93307 0.89273 0.84537 1.19925 0.91152 1.01876 1.31081 0.88691 1.26235 1.02504 0.94265 0.92386 1.69732 1.39538 1.09452 1.18814 0.86059 0.79939 0.79059 0.80624 1.18909 1.19417 1.17726 1.21232 0.90387 0.99740 1.20830 1.18059 0.90272 0.81681 0.94445 1.86483 1.36340 1.13228 1.88433 1.23152 0.82063 0.90198 0.72091 1.93100 1.76246 1.96672 1.51924 1.93088 1.76312 1.96581 1.52097 0.84307 0.89445 0.85933 0.81185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.45 18.54 41.84 0.78 -10.68 15 2 C 0.29 6.76 14.49 -22.47 -0.33 6.44 15 3 C -0.23 -5.27 5.78 -106.24 -0.61 -5.89 15 4 C 0.18 4.13 7.22 -39.43 -0.28 3.85 15 5 F -0.15 -3.39 16.78 2.25 0.04 -3.36 15 6 C -0.21 -4.95 8.58 -39.23 -0.34 -5.29 15 7 C 0.16 3.77 5.56 -106.84 -0.59 3.18 15 8 C -0.41 -9.29 9.04 -37.79 -0.34 -9.63 15 9 H 0.10 2.00 7.90 -52.49 -0.41 1.59 15 10 C 0.07 1.49 5.14 -17.32 -0.09 1.40 15 11 N -0.75 -16.66 10.95 55.56 0.61 -16.05 15 12 Si 0.92 15.67 29.59 -169.99 -5.03 10.64 15 13 H -0.26 -4.47 7.11 56.52 0.40 -4.07 15 14 H -0.27 -4.52 7.11 56.52 0.40 -4.12 15 15 H -0.25 -4.30 7.11 56.52 0.40 -3.89 15 16 C -0.30 -6.61 7.98 -38.77 -0.31 -6.92 15 17 C 0.20 4.33 6.48 -38.81 -0.25 4.08 15 18 O -0.33 -6.12 9.86 -18.93 -0.19 -6.30 15 19 C 0.42 5.95 5.98 101.05 0.60 6.55 15 20 F -0.20 -3.18 15.57 2.25 0.04 -3.14 15 21 F -0.20 -3.12 15.60 2.25 0.04 -3.08 15 22 H 0.14 3.29 6.18 -52.49 -0.32 2.96 15 23 H 0.29 5.80 8.29 -40.82 -0.34 5.46 15 24 H 0.12 2.55 5.08 -52.49 -0.27 2.28 15 25 H 0.17 1.45 8.14 -51.93 -0.42 1.03 15 LS Contribution 250.04 15.07 3.77 3.77 Total: -1.00 -26.15 250.04 -3.06 -29.21 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -0.56 Total: 1.23 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.54 Total: -2.24 kcal Atomic # 7 Polarization: -28.11 SS G_CDS: 1.38 Total: -26.73 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.19 Total: -6.30 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 0.11 Total: -9.58 kcal Atomic # 14 Polarization: 15.67 SS G_CDS: -5.03 Total: 10.64 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.15 -3.06 -29.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575640276.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.203 kcal (2) G-P(sol) polarization free energy of solvation -26.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds