Wall clock time and date at job start Mon Mar 30 2020 06:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39305 * 120.53485 * 144.01728 * 3 2 1 5 5 C 1.38499 * 120.16769 * 180.30729 * 4 3 2 6 6 F 1.35098 * 119.33612 * 179.72762 * 5 4 3 7 7 C 1.38682 * 121.32763 * 359.70532 * 5 4 3 8 8 C 1.38068 * 121.10114 * 359.97438 * 7 5 4 9 9 O 1.35623 * 120.13658 * 180.02562 * 8 7 5 10 10 C 1.42901 * 117.00320 * 359.97438 * 9 8 7 11 11 F 1.39901 * 109.46984 * 300.00117 * 10 9 8 12 12 F 1.39896 * 109.46866 * 60.00071 * 10 9 8 13 13 C 1.41542 * 119.72516 * 0.02817 * 8 7 5 14 14 C 1.40419 * 120.62354 * 180.02562 * 13 8 7 15 15 H 1.08000 * 119.99906 * 143.82801 * 14 13 8 16 16 C 1.40263 * 120.00353 * 323.82370 * 14 13 8 17 17 N 1.30686 * 119.99818 * 333.88765 * 16 14 13 18 18 Si 1.86798 * 120.00349 * 153.60706 * 16 14 13 19 19 H 1.48491 * 109.47281 * 180.27710 * 18 16 14 20 20 H 1.48505 * 109.47145 * 300.28272 * 18 16 14 21 21 H 1.48508 * 109.46793 * 60.27761 * 18 16 14 22 22 H 1.08001 * 119.91722 * 0.02562 * 4 3 2 23 23 H 1.08001 * 119.45220 * 179.97438 * 7 5 4 24 24 H 1.08993 * 109.47209 * 179.97438 * 10 9 8 25 25 H 0.97000 * 120.00299 * 352.69220 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2753 0.9719 -0.7050 5 6 4.6602 0.9615 -0.7050 6 9 5.3292 1.9082 -1.3989 7 6 5.3741 -0.0007 -0.0066 8 6 4.7277 -0.9842 0.7153 9 8 5.4453 -1.9154 1.3916 10 6 6.8690 -1.8199 1.3135 11 9 7.2713 -1.9321 -0.0218 12 9 7.2821 -0.5842 1.8227 13 6 3.3130 -1.0167 0.7466 14 6 2.6362 -2.0081 1.4752 15 1 1.7168 -1.7681 1.9884 16 6 3.1542 -3.3102 1.5362 17 7 3.9184 -3.7552 0.5740 18 14 2.7580 -4.4055 2.9966 19 1 3.4269 -5.7201 2.8252 20 1 3.2432 -3.7620 4.2440 21 1 1.2889 -4.6049 3.0816 22 1 2.7423 1.7322 -1.2567 23 1 6.4537 0.0195 -0.0278 24 1 7.3195 -2.6222 1.8977 25 1 4.0419 -3.2277 -0.2306 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575641641.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:07 Heat of formation + Delta-G solvation = -151.798690 kcal Electronic energy + Delta-G solvation = -18963.826198 eV Core-core repulsion = 15299.407590 eV Total energy + Delta-G solvation = -3664.418607 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.86036 -47.80678 -46.84798 -38.96652 -36.58809 -34.98973 -34.18864 -30.02133 -29.54382 -25.88070 -25.12968 -22.80128 -21.52691 -19.12205 -18.58990 -17.44201 -17.35367 -16.85485 -15.48144 -15.04814 -14.94707 -14.65715 -14.31151 -14.13569 -13.85143 -13.43142 -13.22509 -13.06514 -12.64744 -12.56479 -12.36885 -12.24639 -11.94293 -11.43109 -11.36423 -11.21973 -10.60059 -10.53567 -10.29452 -10.05208 -9.25805 -8.00114 -7.78569 -7.53613 -4.87766 1.68571 2.25757 3.00048 3.04153 3.20332 3.25440 3.70637 3.75624 3.77689 3.98422 4.30719 4.79292 4.88463 5.00386 5.17555 5.43813 5.64372 5.85132 6.02673 6.43099 6.84169 6.89572 7.02667 7.27081 7.42649 7.55985 7.72366 8.14459 8.29879 8.56010 9.61229 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.012611 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.345272 B = 2219.668455 C = 3752.749979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.302 3.698 3 C -0.147 4.147 4 C -0.061 4.061 5 C -0.026 4.026 6 F -0.162 7.162 7 C -0.159 4.159 8 C 0.031 3.969 9 O -0.287 6.287 10 C 0.405 3.595 11 F -0.205 7.205 12 F -0.209 7.209 13 C 0.115 3.885 14 C -0.466 4.466 15 H 0.091 0.909 16 C 0.042 3.958 17 N -0.736 5.736 18 Si 1.066 2.934 19 H -0.269 1.269 20 H -0.269 1.269 21 H -0.273 1.273 22 H 0.117 0.883 23 H 0.122 0.878 24 H 0.168 0.832 25 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 -0.795 2.730 7.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.009 4.009 3 C -0.153 4.153 4 C -0.083 4.083 5 C -0.046 4.046 6 F -0.142 7.142 7 C -0.179 4.179 8 C -0.013 4.013 9 O -0.203 6.203 10 C 0.313 3.687 11 F -0.187 7.187 12 F -0.191 7.191 13 C 0.109 3.891 14 C -0.491 4.491 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.356 5.356 18 Si 0.888 3.112 19 H -0.193 1.193 20 H -0.194 1.194 21 H -0.198 1.198 22 H 0.135 0.865 23 H 0.140 0.860 24 H 0.185 0.815 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.217 -2.387 3.404 6.671 hybrid contribution 0.670 1.972 -1.055 2.335 sum 5.887 -0.415 2.348 6.351 Atomic orbital electron populations 1.81057 1.12312 1.11117 1.12339 1.25287 0.92172 0.91625 0.91795 1.16101 0.83682 1.05239 1.10285 1.20477 0.91895 0.97600 0.98309 1.16337 0.88928 0.93705 1.05655 1.91340 1.80925 1.63495 1.78393 1.20926 0.99672 0.96694 1.00608 1.18439 0.90760 0.91714 1.00353 1.86725 1.14869 1.50336 1.68398 1.23282 0.82082 0.84574 0.78723 1.93056 1.90737 1.96064 1.38881 1.93050 1.90504 1.48597 1.86961 1.17727 0.87210 0.92840 0.91364 1.20649 1.09057 0.95400 1.24027 0.89086 1.27200 0.91644 0.97619 1.02068 1.70320 1.21355 1.39320 1.04557 0.83592 0.77675 0.75860 0.74064 1.19349 1.19399 1.19817 0.86510 0.85988 0.81527 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.37 18.54 41.84 0.78 -10.59 15 2 C 0.30 6.82 14.46 -22.47 -0.33 6.50 15 3 C -0.15 -3.27 5.94 -104.23 -0.62 -3.89 15 4 C -0.06 -1.26 9.72 -39.09 -0.38 -1.64 15 5 C -0.03 -0.55 7.27 -39.32 -0.29 -0.84 15 6 F -0.16 -3.33 17.24 2.25 0.04 -3.29 15 7 C -0.16 -3.37 8.19 -39.48 -0.32 -3.69 15 8 C 0.03 0.68 5.53 -38.39 -0.21 0.47 15 9 O -0.29 -5.85 7.32 -18.57 -0.14 -5.98 15 10 C 0.40 6.54 5.98 101.05 0.60 7.15 15 11 F -0.21 -3.57 15.58 2.25 0.04 -3.54 15 12 F -0.21 -3.50 15.58 2.25 0.04 -3.47 15 13 C 0.11 2.67 5.18 -104.47 -0.54 2.13 15 14 C -0.47 -10.89 8.21 -38.00 -0.31 -11.20 15 15 H 0.09 2.15 7.73 -52.49 -0.41 1.74 15 16 C 0.04 0.93 4.22 -17.28 -0.07 0.86 15 17 N -0.74 -16.85 11.90 55.57 0.66 -16.19 15 18 Si 1.07 19.09 30.01 -169.99 -5.10 13.99 15 19 H -0.27 -4.73 7.11 56.52 0.40 -4.33 15 20 H -0.27 -4.64 7.11 56.52 0.40 -4.24 15 21 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 22 H 0.12 2.13 8.06 -52.49 -0.42 1.71 15 23 H 0.12 2.47 5.02 -52.49 -0.26 2.21 15 24 H 0.17 1.89 8.14 -51.93 -0.42 1.47 15 25 H 0.30 7.16 7.26 -40.82 -0.30 6.87 15 LS Contribution 248.38 15.07 3.74 3.74 Total: -1.00 -25.43 248.38 -3.02 -28.45 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -0.61 Total: 1.04 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.47 Total: -4.16 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 1.44 Total: -26.78 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.14 Total: -5.98 kcal Atomic # 9 Polarization: -10.41 SS G_CDS: 0.11 Total: -10.30 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.10 Total: 13.99 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -25.43 -3.02 -28.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575641641.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.351 kcal (2) G-P(sol) polarization free energy of solvation -25.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds