Wall clock time and date at job start Mon Mar 30 2020 06:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99845 * 2 1 4 4 H 1.48493 * 109.46804 * 269.99788 * 3 2 1 5 5 H 1.48500 * 109.47199 * 29.99881 * 3 2 1 6 6 H 1.48500 * 109.46947 * 149.99916 * 3 2 1 7 7 C 1.37874 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00584 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47119 * 179.97438 * 10 9 7 12 12 O 1.21271 * 119.99819 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99970 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00186 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47445 * 180.02562 * 14 13 11 16 16 C 1.34489 * 125.77976 * 89.99805 * 15 14 13 17 17 C 1.41411 * 106.85202 * 180.02562 * 16 15 14 18 18 C 1.34654 * 106.82838 * 0.24608 * 17 16 15 19 19 Cl 1.73600 * 125.79814 * 179.75752 * 18 17 16 20 20 O 1.34307 * 108.39708 * 359.60398 * 18 17 16 21 21 H 0.96999 * 119.99641 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47053 * 59.99701 * 9 7 2 23 23 H 1.08998 * 109.46762 * 299.99495 * 9 7 2 24 24 H 1.08998 * 109.47066 * 60.00121 * 10 9 7 25 25 H 1.09002 * 109.47141 * 300.00108 * 10 9 7 26 26 H 0.97002 * 119.99722 * 0.02562 * 13 11 10 27 27 H 1.08998 * 109.47259 * 59.99379 * 14 13 11 28 28 H 1.09002 * 109.47209 * 300.00112 * 14 13 11 29 29 H 1.08002 * 126.57444 * 0.02877 * 16 15 14 30 30 H 1.08002 * 126.58234 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0021 13 7 2.1657 -6.1344 0.0018 14 6 1.4333 -7.4031 0.0030 15 6 2.4126 -8.5485 0.0041 16 6 2.9235 -9.1451 1.0958 17 6 3.7933 -10.1619 0.6381 18 6 3.7657 -10.1219 -0.7075 19 17 4.6629 -11.1582 -1.7728 20 8 2.9236 -9.1463 -1.0855 21 1 -0.4849 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8895 26 1 3.1358 -6.1343 0.0022 27 1 0.8063 -7.4615 -0.8867 28 1 0.8069 -7.4602 0.8932 29 1 2.7104 -8.8955 2.1248 30 1 4.3721 -10.8375 1.2504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589685801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:52 Heat of formation + Delta-G solvation = -34.998701 kcal Electronic energy + Delta-G solvation = -15796.068523 eV Core-core repulsion = 12811.971729 eV Total energy + Delta-G solvation = -2984.096794 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.04533 -39.18801 -37.37688 -34.95481 -33.46895 -33.43521 -31.26719 -30.18167 -26.60030 -24.97810 -22.36787 -21.69012 -20.96458 -19.78147 -18.16004 -16.98265 -16.75977 -15.91887 -15.54020 -15.32865 -14.57969 -14.40738 -13.90412 -13.51001 -13.31472 -13.11032 -12.66479 -12.50046 -12.17905 -11.98770 -11.66783 -11.17979 -10.93133 -10.60574 -10.39009 -9.97341 -9.70302 -9.34866 -9.10474 -8.96160 -8.73101 -8.32496 -5.96600 -4.01061 0.80795 1.06235 2.05788 2.96675 3.16781 3.33466 3.39453 3.41951 3.60924 4.35873 4.47430 4.50509 5.10921 5.12557 5.24451 5.38462 5.46164 5.47409 5.68583 5.96261 6.20148 6.21839 6.50610 6.55437 6.86393 7.73054 7.75956 7.84845 8.06164 8.37266 8.67443 9.07283 9.62606 11.14342 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.045776 B = 0.003119 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.530791 B = 8974.078579 C = 9264.529120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.531 6.531 13 N -0.743 5.743 14 C 0.200 3.800 15 C -0.007 4.007 16 C -0.181 4.181 17 C -0.175 4.175 18 C 0.025 3.975 19 Cl 0.024 6.976 20 O -0.163 6.163 21 H 0.261 0.739 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.401 0.599 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.162 0.838 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.467 -22.429 0.587 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.406 6.406 13 N -0.399 5.399 14 C 0.076 3.924 15 C -0.057 4.057 16 C -0.201 4.201 17 C -0.196 4.196 18 C -0.052 4.052 19 Cl 0.053 6.947 20 O -0.061 6.061 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.235 0.765 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.180 0.820 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.400 -22.305 0.189 23.836 hybrid contribution 1.150 0.571 -0.071 1.286 sum 9.550 -21.734 0.119 23.740 Atomic orbital electron populations 1.69998 1.06057 1.26608 1.50172 1.25027 0.94832 0.99246 0.95288 0.86584 0.79770 0.83481 0.78075 1.20672 1.21221 1.19874 1.21219 0.92949 0.90991 1.51432 0.92578 1.18913 0.93172 0.89334 0.98691 1.21885 1.00772 0.91530 1.02695 1.21640 0.88669 0.85343 0.74169 1.90684 1.14386 1.87472 1.48051 1.46317 1.10376 1.04674 1.78575 1.19615 0.90136 0.77988 1.04629 1.22545 1.01039 0.98724 0.83408 1.21706 1.00256 0.97990 1.00153 1.21579 1.03782 1.02594 0.91609 1.22480 0.98221 0.94084 0.90370 1.98437 1.69438 1.60250 1.66591 1.83981 1.47330 1.39066 1.35685 0.92933 0.95775 0.95732 0.90042 0.90075 0.76488 0.89704 0.87991 0.82026 0.82124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.13 -2.56 5.64 -27.88 -0.16 -2.71 16 11 C 0.51 9.52 7.83 -10.98 -0.09 9.43 16 12 O -0.53 -12.08 15.98 5.56 0.09 -12.00 16 13 N -0.74 -10.07 5.55 -61.48 -0.34 -10.41 16 14 C 0.20 2.37 6.20 -5.20 -0.03 2.33 16 15 C -0.01 -0.07 6.69 -35.64 -0.24 -0.31 16 16 C -0.18 -1.63 10.81 -39.70 -0.43 -2.06 16 17 C -0.18 -1.51 10.88 -39.64 -0.43 -1.94 16 18 C 0.03 0.25 7.93 29.46 0.23 0.49 16 19 Cl 0.02 0.20 29.30 -51.86 -1.52 -1.32 16 20 O -0.16 -1.90 10.65 5.51 0.06 -1.84 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 24 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 26 H 0.40 4.48 8.46 -40.82 -0.35 4.14 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 289.84 15.07 4.37 4.37 Total: -1.00 -33.25 289.84 -6.56 -39.82 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -3.26 Total: -1.05 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.67 Total: -7.54 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.40 Total: -37.01 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.15 Total: -13.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.52 Total: -1.32 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.25 -6.56 -39.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589685801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.820 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds