Wall clock time and date at job start Mon Mar 30 2020 06:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99845 * 2 1 4 4 H 1.48493 * 109.46804 * 269.99788 * 3 2 1 5 5 H 1.48500 * 109.47199 * 29.99881 * 3 2 1 6 6 H 1.48500 * 109.46947 * 149.99916 * 3 2 1 7 7 C 1.37874 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00584 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47119 * 179.97438 * 10 9 7 12 12 O 1.21271 * 119.99819 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99970 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00186 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47445 * 180.02562 * 14 13 11 16 16 C 1.34489 * 125.77976 * 89.99805 * 15 14 13 17 17 C 1.41411 * 106.85202 * 180.02562 * 16 15 14 18 18 C 1.34654 * 106.82838 * 0.24608 * 17 16 15 19 19 Cl 1.73600 * 125.79814 * 179.75752 * 18 17 16 20 20 O 1.34307 * 108.39708 * 359.60398 * 18 17 16 21 21 H 0.96999 * 119.99641 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47053 * 59.99701 * 9 7 2 23 23 H 1.08998 * 109.46762 * 299.99495 * 9 7 2 24 24 H 1.08998 * 109.47066 * 60.00121 * 10 9 7 25 25 H 1.09002 * 109.47141 * 300.00108 * 10 9 7 26 26 H 0.97002 * 119.99722 * 0.02562 * 13 11 10 27 27 H 1.08998 * 109.47259 * 59.99379 * 14 13 11 28 28 H 1.09002 * 109.47209 * 300.00112 * 14 13 11 29 29 H 1.08002 * 126.57444 * 0.02877 * 16 15 14 30 30 H 1.08002 * 126.58234 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0021 13 7 2.1657 -6.1344 0.0018 14 6 1.4333 -7.4031 0.0030 15 6 2.4126 -8.5485 0.0041 16 6 2.9235 -9.1451 1.0958 17 6 3.7933 -10.1619 0.6381 18 6 3.7657 -10.1219 -0.7075 19 17 4.6629 -11.1582 -1.7728 20 8 2.9236 -9.1463 -1.0855 21 1 -0.4849 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8895 26 1 3.1358 -6.1343 0.0022 27 1 0.8063 -7.4615 -0.8867 28 1 0.8069 -7.4602 0.8932 29 1 2.7104 -8.8955 2.1248 30 1 4.3721 -10.8375 1.2504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589685801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:51 Heat of formation + Delta-G solvation = -57.864454 kcal Electronic energy + Delta-G solvation = -15797.060057 eV Core-core repulsion = 12811.971729 eV Total energy + Delta-G solvation = -2985.088328 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.80877 -40.66667 -38.05618 -36.21495 -35.51831 -34.21588 -33.08711 -31.32661 -28.11103 -26.45520 -23.53010 -23.09011 -21.81130 -21.24051 -19.08774 -18.68786 -17.70755 -17.47007 -16.83800 -16.69300 -16.36706 -15.64448 -14.99654 -14.62680 -14.42352 -14.17139 -13.99981 -13.87067 -13.28853 -13.21002 -13.18146 -12.79832 -12.46682 -12.36256 -11.89899 -11.62756 -11.29544 -11.13306 -10.83579 -10.55541 -10.20153 -9.56797 -8.16611 -6.30321 0.10805 0.27943 1.34750 1.43696 1.46071 1.57005 1.68139 2.12494 2.40398 2.51245 3.16586 3.55607 3.84763 4.02458 4.22707 4.40067 4.48286 4.57545 4.58550 4.70050 4.83498 5.09071 5.27765 5.32287 5.52434 5.65926 5.80145 5.87558 6.19454 6.51140 6.88272 7.27319 7.39910 8.95977 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.045776 B = 0.003119 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.530791 B = 8974.078579 C = 9264.529120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.517 3.483 12 O -0.583 6.583 13 N -0.719 5.719 14 C 0.202 3.798 15 C -0.024 4.024 16 C -0.166 4.166 17 C -0.169 4.169 18 C 0.011 3.989 19 Cl 0.033 6.967 20 O -0.185 6.185 21 H 0.263 0.737 22 H -0.017 1.017 23 H -0.014 1.014 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.416 0.584 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.184 0.816 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.078 -23.132 1.278 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.306 3.694 12 O -0.462 6.462 13 N -0.374 5.374 14 C 0.079 3.921 15 C -0.074 4.074 16 C -0.186 4.186 17 C -0.189 4.189 18 C -0.065 4.065 19 Cl 0.061 6.939 20 O -0.083 6.083 21 H 0.071 0.929 22 H 0.001 0.999 23 H 0.004 0.996 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.253 0.747 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.201 0.799 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 11.079 -23.059 0.882 25.598 hybrid contribution 0.357 0.664 -0.297 0.810 sum 11.437 -22.395 0.584 25.153 Atomic orbital electron populations 1.70174 1.08265 1.27780 1.51536 1.26125 0.95722 1.03900 0.94705 0.85334 0.78711 0.77820 0.78457 1.19841 1.21210 1.17879 1.21727 0.94017 0.91663 1.50679 0.90625 1.18705 0.93742 0.92347 0.94897 1.21649 0.99369 0.89865 1.05015 1.21304 0.87795 0.86340 0.73962 1.90673 1.16444 1.88217 1.50844 1.45990 1.11092 1.04064 1.76240 1.19605 0.90394 0.77472 1.04633 1.22277 1.02047 0.99200 0.83889 1.22025 0.98918 0.97017 1.00640 1.21948 1.03282 1.02424 0.91212 1.22841 0.98284 0.94122 0.91288 1.98439 1.69094 1.59827 1.66498 1.83941 1.48082 1.39866 1.36433 0.92871 0.99899 0.99570 0.87411 0.87870 0.74683 0.90771 0.87099 0.79895 0.79508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.27 13.29 21.45 0.28 -58.99 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.04 2.24 4.26 29.85 0.13 2.37 16 10 C -0.12 -4.65 5.64 29.85 0.17 -4.48 16 11 C 0.52 19.13 7.83 87.66 0.69 19.82 16 12 O -0.58 -27.42 15.98 -3.00 -0.05 -27.47 16 13 N -0.72 -18.49 5.55 -466.80 -2.59 -21.08 16 14 C 0.20 4.60 6.20 85.63 0.53 5.13 16 15 C -0.02 -0.47 6.69 24.83 0.17 -0.31 16 16 C -0.17 -2.51 10.81 22.19 0.24 -2.27 16 17 C -0.17 -2.41 10.88 22.23 0.24 -2.17 16 18 C 0.01 0.20 7.93 67.00 0.53 0.73 16 19 Cl 0.03 0.50 29.30 -2.72 -0.08 0.42 16 20 O -0.18 -4.07 10.65 -3.20 -0.03 -4.10 16 21 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 22 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 23 H -0.01 -0.87 8.10 -2.39 -0.02 -0.89 16 24 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 25 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 26 H 0.42 8.28 8.46 -92.71 -0.78 7.50 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -74.44 289.84 3.33 -71.11 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 0.38 Total: 5.54 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 3.39 Total: -11.56 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -2.30 Total: -80.07 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.08 Total: -31.57 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -0.08 Total: 0.42 kcal Total: -74.44 3.33 -71.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589685801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.250 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds