Wall clock time and date at job start Mon Mar 30 2020 06:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21283 * 120.00261 * 120.00003 * 12 2 1 14 14 N 1.34777 * 120.00075 * 300.00543 * 12 2 1 15 15 C 1.46500 * 120.00084 * 180.02562 * 14 12 2 16 16 C 1.50696 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.34499 * 125.77887 * 89.99963 * 16 15 14 18 18 C 1.41404 * 106.85452 * 179.97438 * 17 16 15 19 19 C 1.34660 * 106.82790 * 359.97438 * 18 17 16 20 20 Cl 1.73592 * 125.80134 * 180.02562 * 19 18 17 21 21 O 1.34308 * 108.39696 * 359.73576 * 19 18 17 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 0.96996 * 119.99636 * 359.97438 * 14 12 2 27 27 H 1.09001 * 109.47049 * 299.99628 * 15 14 12 28 28 H 1.09000 * 109.47381 * 59.99594 * 15 14 12 29 29 H 1.08000 * 126.57116 * 359.97438 * 17 16 15 30 30 H 1.07995 * 126.58691 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1956 -0.9404 3.6507 16 6 1.6936 -0.2298 4.8811 17 6 0.5409 -0.4891 5.5236 18 6 0.4700 0.4061 6.6160 19 6 1.5855 1.1593 6.5757 20 17 2.0005 2.4199 7.6947 21 8 2.3254 0.7653 5.5264 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 1.1493 0.5387 2.5435 27 1 1.8328 -1.9682 3.6508 28 1 3.2856 -0.9399 3.6505 29 1 -0.1905 -1.2375 5.2565 30 1 -0.3255 0.4723 7.3433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596783879.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:11 Heat of formation + Delta-G solvation = -49.244550 kcal Electronic energy + Delta-G solvation = -16317.125143 eV Core-core repulsion = 13332.410602 eV Total energy + Delta-G solvation = -2984.714541 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.79161 -40.55191 -38.04811 -36.08037 -35.73452 -34.19381 -32.72193 -30.98225 -27.24901 -26.92124 -24.16980 -23.07503 -21.78348 -21.17053 -19.04441 -18.33401 -17.78376 -17.60286 -16.69007 -16.39864 -16.16540 -15.56691 -14.70744 -14.59636 -14.42979 -14.15796 -13.97709 -13.45269 -13.22808 -13.16775 -12.95467 -12.68056 -12.57106 -12.35646 -12.18483 -12.00603 -11.09720 -11.02616 -10.64775 -10.38655 -10.09672 -9.53603 -8.13727 -6.24328 0.11542 0.30308 1.36942 1.42656 1.43495 1.55289 1.88858 2.17830 2.42193 2.63262 3.16124 3.58205 3.86321 4.19602 4.30550 4.44861 4.58229 4.71202 4.77462 4.84468 4.96729 5.03925 5.30513 5.43093 5.51119 5.76022 5.81965 5.95157 6.21863 6.66684 6.85602 7.39093 7.49289 8.92056 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.046317 B = 0.003807 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.387915 B = 7353.767956 C = 7493.781312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.040 0.960 4 C -0.529 4.529 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.527 3.473 13 O -0.581 6.581 14 N -0.726 5.726 15 C 0.203 3.797 16 C -0.023 4.023 17 C -0.168 4.168 18 C -0.167 4.167 19 C 0.010 3.990 20 Cl 0.033 6.967 21 O -0.185 6.185 22 H 0.051 0.949 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.265 0.735 26 H 0.410 0.590 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.183 0.817 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 1.960 19.972 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.316 3.684 13 O -0.460 6.460 14 N -0.380 5.380 15 C 0.080 3.920 16 C -0.073 4.073 17 C -0.188 4.188 18 C -0.187 4.187 19 C -0.066 4.066 20 Cl 0.062 6.938 21 O -0.084 6.084 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.246 0.754 27 H 0.128 0.872 28 H 0.091 0.909 29 H 0.200 0.800 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.720 1.600 19.783 20.033 hybrid contribution 0.240 0.242 -0.677 0.758 sum -2.480 1.842 19.106 19.354 Atomic orbital electron populations 1.21554 0.94808 0.99669 1.01687 1.18833 0.95568 0.95926 0.89513 0.94194 1.21304 1.31623 1.12789 0.91034 0.93081 1.25597 0.95198 0.95720 1.01460 1.69950 1.37286 1.23564 1.24308 0.85590 0.78686 0.78512 0.79072 1.19881 1.20161 1.20309 1.21521 0.78080 0.83686 0.85102 1.90524 1.39637 1.28473 1.87352 1.46106 1.54730 1.32863 1.04312 1.19598 0.99787 0.94914 0.77720 1.22313 0.94930 0.92495 0.97603 1.22018 0.97895 1.02915 0.95927 1.21937 0.98393 0.96531 1.01855 1.22845 0.93670 0.98753 0.91372 1.98432 1.94364 1.47421 1.53570 1.83938 1.45483 1.44237 1.34744 0.93007 0.95417 0.91203 0.92624 0.75388 0.87196 0.90914 0.79962 0.79366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.87 71.98 0.64 -4.66 16 2 C 0.02 1.13 2.64 -12.29 -0.03 1.10 16 3 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.53 -30.37 8.37 25.60 0.21 -30.15 16 5 H 0.05 3.12 6.75 -2.91 -0.02 3.10 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -50.98 11.32 21.45 0.24 -50.74 16 8 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 C 0.53 23.49 7.15 87.66 0.63 24.11 16 13 O -0.58 -29.93 15.46 -3.04 -0.05 -29.98 16 14 N -0.73 -23.93 5.44 -466.79 -2.54 -26.47 16 15 C 0.20 5.56 6.20 85.63 0.53 6.09 16 16 C -0.02 -0.55 6.69 24.83 0.17 -0.38 16 17 C -0.17 -3.12 10.81 22.19 0.24 -2.88 16 18 C -0.17 -2.86 10.88 22.23 0.24 -2.61 16 19 C 0.01 0.21 7.93 67.00 0.53 0.74 16 20 Cl 0.03 0.58 29.30 -2.72 -0.08 0.51 16 21 O -0.19 -4.74 10.65 -3.20 -0.03 -4.77 16 22 H 0.05 1.84 7.56 -2.39 -0.02 1.83 16 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 3.47 6.07 -2.38 -0.01 3.46 16 25 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 26 H 0.41 11.87 7.88 -92.71 -0.73 11.14 16 27 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -65.83 283.14 3.62 -62.21 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.44 Total: 9.71 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 3.61 Total: -7.13 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -2.30 Total: -77.21 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.08 Total: -34.75 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 17 Polarization: 0.58 SS G_CDS: -0.08 Total: 0.51 kcal Total: -65.83 3.62 -62.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596783879.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.966 kcal (2) G-P(sol) polarization free energy of solvation -65.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds