Wall clock time and date at job start Mon Mar 30 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47097 * 2 1 4 4 C 1.46501 * 119.99714 * 265.08563 * 3 2 1 5 5 C 1.50695 * 109.47047 * 262.20646 * 4 3 2 6 6 H 1.08007 * 120.00332 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99858 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99668 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00107 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47012 * 90.00238 * 9 7 5 11 11 H 1.48498 * 109.47356 * 210.00248 * 9 7 5 12 12 H 1.48502 * 109.46910 * 330.00078 * 9 7 5 13 13 C 1.34780 * 120.00246 * 85.08534 * 3 2 1 14 14 O 1.21736 * 119.99612 * 1.92295 * 13 3 2 15 15 C 1.46330 * 120.00066 * 181.92517 * 13 3 2 16 16 C 1.36739 * 125.43787 * 172.11632 * 15 13 3 17 17 C 1.37345 * 113.33140 * 179.97438 * 16 15 13 18 18 C 1.34201 * 115.04982 * 0.02562 * 17 16 15 19 19 F 1.35102 * 124.54314 * 179.97438 * 18 17 16 20 20 S 1.70623 * 110.91692 * 359.97438 * 18 17 16 21 21 H 1.09001 * 109.46802 * 60.00342 * 1 2 3 22 22 H 1.08997 * 109.46792 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47541 * 300.00496 * 1 2 3 24 24 H 1.08993 * 109.47541 * 239.99504 * 2 1 3 25 25 H 1.09001 * 109.46802 * 119.99658 * 2 1 3 26 26 H 1.08998 * 109.47055 * 22.21089 * 4 3 2 27 27 H 1.09004 * 109.47048 * 142.20765 * 4 3 2 28 28 H 0.97000 * 119.99597 * 179.97438 * 8 7 5 29 29 H 1.07995 * 123.33425 * 0.02562 * 16 15 13 30 30 H 1.08003 * 122.47562 * 179.72933 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3650 2.0356 -1.2641 5 6 3.8539 1.9525 -1.4810 6 1 4.4795 1.4610 -0.7505 7 6 4.4176 2.5039 -2.6120 8 7 5.7171 2.4309 -2.8015 9 14 3.3357 3.3532 -3.8758 10 1 3.2146 4.7937 -3.5357 11 1 3.9441 3.2122 -5.2231 12 1 1.9883 2.7290 -3.8733 13 6 2.1487 2.0500 1.1629 14 8 1.8941 1.4949 2.2160 15 6 2.5962 3.4432 1.1596 16 6 2.6220 4.2702 2.2482 17 6 3.0893 5.5299 1.9633 18 6 3.4356 5.7313 0.6825 19 9 3.9165 6.8951 0.1928 20 16 3.1871 4.3208 -0.2448 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8498 1.5364 -2.0848 27 1 2.0610 3.0817 -1.2270 28 1 6.1136 2.8185 -3.5974 29 1 2.3069 3.9631 3.2344 30 1 3.1675 6.3029 2.7136 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596891807.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:20 Heat of formation + Delta-G solvation = -41.629386 kcal Electronic energy + Delta-G solvation = -17274.860733 eV Core-core repulsion = 14304.892906 eV Total energy + Delta-G solvation = -2969.967826 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.42548 -39.32882 -36.89012 -35.35605 -33.09277 -31.23586 -28.53050 -27.88646 -24.52688 -22.96373 -22.73198 -20.15141 -18.84175 -17.53613 -17.38217 -16.30868 -16.00065 -15.35122 -15.02632 -14.71260 -14.18783 -13.84823 -13.64998 -13.19654 -12.81099 -12.73988 -12.60041 -12.25088 -11.89742 -11.59972 -11.45727 -11.18800 -10.90931 -10.57562 -10.48950 -9.93551 -9.59294 -9.38549 -9.09925 -8.21153 -8.01568 -7.77437 -6.50685 -4.48024 1.01557 1.91949 2.46950 2.77353 3.00639 3.07281 3.12213 3.65192 3.81674 4.01145 4.79974 4.93300 5.15470 5.52825 5.63009 5.71620 5.78745 5.94308 6.04825 6.09835 6.23913 6.27759 6.31753 6.50528 6.57418 6.78834 7.03756 7.13897 7.87664 8.11142 8.55750 8.75251 9.02838 10.59679 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.013771 C = 0.007933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.981202 B = 2032.798278 C = 3528.903630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.591 5.591 4 C 0.198 3.802 5 C -0.537 4.537 6 H 0.090 0.910 7 C 0.090 3.910 8 N -0.864 5.864 9 Si 0.843 3.157 10 H -0.260 1.260 11 H -0.272 1.272 12 H -0.256 1.256 13 C 0.596 3.404 14 O -0.557 6.557 15 C -0.281 4.281 16 C -0.057 4.057 17 C -0.207 4.207 18 C -0.112 4.112 19 F -0.119 7.119 20 S 0.377 5.623 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.029 0.971 28 H 0.274 0.726 29 H 0.148 0.852 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 1.921 2.039 7.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.004 4.004 3 N -0.322 5.322 4 C 0.074 3.926 5 C -0.580 4.580 6 H 0.108 0.892 7 C -0.119 4.119 8 N -0.499 5.499 9 Si 0.668 3.332 10 H -0.185 1.185 11 H -0.197 1.197 12 H -0.180 1.180 13 C 0.385 3.615 14 O -0.439 6.439 15 C -0.403 4.403 16 C -0.091 4.091 17 C -0.239 4.239 18 C -0.249 4.249 19 F -0.099 7.099 20 S 0.652 5.348 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.110 1.479 0.918 7.320 hybrid contribution -0.270 1.283 0.640 1.458 sum -7.380 2.761 1.557 8.032 Atomic orbital electron populations 1.22147 0.96593 1.01618 1.02101 1.21309 0.93471 0.82508 1.03153 1.47770 1.63688 1.13792 1.06911 1.20081 0.97958 0.91738 0.82855 1.21474 0.90142 1.38330 1.08086 0.89156 1.24856 0.94940 0.94932 0.97129 1.69853 1.10018 1.42294 1.27731 0.87267 0.81936 0.81556 0.82469 1.18476 1.19741 1.17990 1.16804 0.76889 0.84225 0.83589 1.90731 1.53247 1.68915 1.31001 1.24462 1.16739 0.99771 0.99322 1.20114 0.98914 0.91184 0.98895 1.19964 1.08821 0.99297 0.95776 1.24295 1.08219 0.91200 1.01190 1.91414 1.85905 1.44813 1.87720 1.86135 1.51982 0.92266 1.04389 0.92748 0.92002 0.92408 0.89987 0.90521 0.92812 0.95496 0.91609 0.83428 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.20 37.16 0.38 -1.97 16 2 C 0.12 1.99 6.06 -4.04 -0.02 1.97 16 3 N -0.59 -11.85 2.49 -176.73 -0.44 -12.29 16 4 C 0.20 4.11 3.79 -5.20 -0.02 4.09 16 5 C -0.54 -12.97 7.50 -34.44 -0.26 -13.22 16 6 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 7 C 0.09 2.21 5.08 -17.82 -0.09 2.12 16 8 N -0.86 -23.09 13.96 55.43 0.77 -22.32 16 9 Si 0.84 17.85 26.79 -169.99 -4.55 13.30 16 10 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 11 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.26 -5.04 6.54 56.52 0.37 -4.67 16 13 C 0.60 12.68 7.52 -13.01 -0.10 12.58 16 14 O -0.56 -12.61 16.50 5.16 0.09 -12.53 16 15 C -0.28 -5.71 6.22 -36.87 -0.23 -5.94 16 16 C -0.06 -1.04 10.01 -40.45 -0.40 -1.45 16 17 C -0.21 -3.61 10.16 -41.33 -0.42 -4.03 16 18 C -0.11 -2.15 8.10 29.31 0.24 -1.92 16 19 F -0.12 -2.28 17.32 2.25 0.04 -2.24 16 20 S 0.38 7.69 15.17 -107.50 -1.63 6.06 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.08 1.29 8.03 -51.93 -0.42 0.88 16 25 H 0.08 1.32 7.55 -51.93 -0.39 0.93 16 26 H 0.05 1.06 7.07 -51.93 -0.37 0.69 16 27 H 0.03 0.57 3.95 -22.31 -0.09 0.49 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.15 2.42 8.06 -52.49 -0.42 2.00 16 30 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 271.14 15.07 4.09 4.09 Total: -1.00 -26.98 271.14 -5.54 -32.52 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -2.97 Total: 1.19 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.93 Total: -7.77 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.33 Total: -34.60 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -4.55 Total: 13.30 kcal Atomic # 16 Polarization: 7.69 SS G_CDS: -1.63 Total: 6.06 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.98 -5.54 -32.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891807.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.114 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds