Wall clock time and date at job start Mon Mar 30 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48495 * 109.46861 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47101 * 300.00151 * 3 2 1 6 6 H 1.48501 * 109.47045 * 60.00105 * 3 2 1 7 7 C 1.37876 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00536 * 0.02562 * 7 2 1 10 10 C 1.53514 * 114.17464 * 179.97438 * 9 7 2 11 11 N 1.47479 * 87.93385 * 220.13847 * 10 9 7 12 12 C 1.46893 * 110.99903 * 138.70282 * 11 10 9 13 13 C 1.50705 * 109.47228 * 170.00043 * 12 11 10 14 14 C 1.33399 * 122.54411 * 260.02459 * 13 12 11 15 15 S 1.75873 * 109.60754 * 179.97438 * 14 13 12 16 16 C 1.75881 * 90.98313 * 359.81183 * 15 14 13 17 17 C 1.33439 * 109.59653 * 0.33370 * 16 15 14 18 18 Cl 1.73599 * 122.55243 * 179.87034 * 17 16 15 19 19 C 1.47480 * 87.83436 * 27.01159 * 11 10 9 20 20 H 0.97004 * 119.99901 * 0.02562 * 1 2 3 21 21 H 1.09004 * 113.25513 * 312.95327 * 9 7 2 22 22 H 1.09000 * 113.47303 * 105.37067 * 10 9 7 23 23 H 1.08999 * 113.53079 * 334.91881 * 10 9 7 24 24 H 1.09004 * 109.47218 * 49.99869 * 12 11 10 25 25 H 1.08998 * 109.47454 * 290.00019 * 12 11 10 26 26 H 1.08007 * 125.19514 * 359.95385 * 14 13 12 27 27 H 1.07994 * 125.20087 * 180.20533 * 16 15 14 28 28 H 1.08993 * 113.47879 * 87.75623 * 19 11 10 29 29 H 1.09001 * 113.47358 * 218.22386 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1496 -3.7438 0.0005 11 7 1.2050 -4.3603 -0.9496 12 6 1.9205 -5.0902 -2.0045 13 6 0.9383 -5.9039 -2.8072 14 6 0.7607 -7.2115 -2.6117 15 16 -0.4586 -7.8146 -3.7265 16 6 -0.6694 -6.2089 -4.4124 17 6 0.1512 -5.3508 -3.8033 18 17 0.2214 -3.6677 -4.2227 19 6 0.8518 -2.9994 -1.3948 20 1 -0.4850 0.8401 -0.0004 21 1 0.4446 -2.5305 0.7332 22 1 2.1889 -4.2510 0.9646 23 1 3.1382 -3.5669 -0.4231 24 1 2.6574 -5.7535 -1.5517 25 1 2.4250 -4.3800 -2.6597 26 1 1.2858 -7.8086 -1.8808 27 1 -1.3564 -5.9564 -5.2065 28 1 1.4936 -2.6228 -2.1912 29 1 -0.2089 -2.8756 -1.6134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194352.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:23 Heat of formation + Delta-G solvation = 45.062809 kcal Electronic energy + Delta-G solvation = -14685.794762 eV Core-core repulsion = 12147.922567 eV Total energy + Delta-G solvation = -2537.872196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.87112 -39.03624 -37.05297 -34.72696 -32.21825 -29.90393 -27.55811 -26.55329 -24.98901 -23.30728 -20.47311 -19.95602 -18.97251 -18.27917 -16.86054 -16.73142 -16.24881 -15.77507 -15.09068 -14.64601 -14.34701 -14.17506 -13.83392 -13.53354 -13.24494 -13.08145 -12.88165 -12.45761 -12.33612 -12.05557 -12.02931 -11.83229 -11.43007 -11.14534 -10.82322 -10.45163 -9.80175 -9.62325 -9.22274 -8.13919 -6.24746 -0.09616 0.38686 0.79349 1.40602 1.42068 1.44754 1.53929 1.69559 2.42542 3.15432 3.47751 3.79145 3.98748 4.17730 4.34844 4.47433 4.54566 4.62030 4.76185 4.80821 4.90389 4.99363 5.09929 5.24199 5.31834 5.57022 5.64308 5.87160 6.31351 6.40721 6.84742 7.43234 8.95991 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.037733 B = 0.005593 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.881868 B = 5005.232240 C = 5425.695425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.015 3.985 10 C 0.011 3.989 11 N -0.476 5.476 12 C 0.075 3.925 13 C -0.105 4.105 14 C -0.193 4.193 15 S 0.186 5.814 16 C -0.221 4.221 17 C -0.059 4.059 18 Cl -0.063 7.063 19 C 0.034 3.966 20 H 0.261 0.739 21 H 0.028 0.972 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.097 0.903 25 H 0.045 0.955 26 H 0.193 0.807 27 H 0.189 0.811 28 H 0.050 0.950 29 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -15.242 -8.767 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.118 4.118 11 N -0.198 5.198 12 C -0.055 4.055 13 C -0.117 4.117 14 C -0.329 4.329 15 S 0.449 5.551 16 C -0.358 4.358 17 C -0.099 4.099 18 Cl -0.035 7.035 19 C -0.095 4.095 20 H 0.070 0.930 21 H 0.046 0.954 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.116 0.884 25 H 0.063 0.937 26 H 0.210 0.790 27 H 0.206 0.794 28 H 0.068 0.932 29 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.128 -16.916 -8.880 19.105 hybrid contribution 1.310 3.237 -0.153 3.495 sum 1.182 -13.679 -9.034 16.435 Atomic orbital electron populations 1.70115 1.07525 1.27369 1.51031 1.25826 0.95588 1.02663 0.94465 0.85547 0.79287 0.79535 0.77565 1.18645 1.20843 1.20504 1.21399 0.92995 0.91419 1.50717 0.92194 1.20107 0.94590 0.92212 0.93531 1.23837 0.95414 0.95580 0.96969 1.68833 1.27412 1.12972 1.10625 1.21337 0.93965 0.97001 0.93211 1.18571 1.00976 0.94538 0.97652 1.25684 1.04412 0.97402 1.05415 1.83911 1.35802 1.05928 1.29481 1.25801 1.05509 0.97061 1.07380 1.19993 1.02215 0.86876 1.00819 1.98390 1.97779 1.14664 1.92655 1.23754 0.98589 0.88017 0.99133 0.92974 0.95426 0.90434 0.91842 0.88424 0.93708 0.79007 0.79416 0.93172 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.09 13.26 21.45 0.28 -54.81 15 2 C 0.01 0.77 5.46 84.65 0.46 1.24 15 3 Si 0.96 43.86 29.54 68.60 2.03 45.89 15 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 15 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 7 C -0.53 -29.23 8.83 25.60 0.23 -29.00 15 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 15 9 C 0.01 0.76 3.76 -11.20 -0.04 0.72 15 10 C 0.01 0.44 7.24 83.57 0.61 1.05 15 11 N -0.48 -19.22 6.32 -932.54 -5.89 -25.11 15 12 C 0.08 2.48 4.75 85.56 0.41 2.88 15 13 C -0.11 -3.11 5.39 -20.90 -0.11 -3.22 15 14 C -0.19 -4.42 10.95 66.72 0.73 -3.69 15 15 S 0.19 3.52 23.34 -56.49 -1.32 2.20 15 16 C -0.22 -5.27 11.08 66.73 0.74 -4.53 15 17 C -0.06 -1.79 6.26 21.24 0.13 -1.66 15 18 Cl -0.06 -2.17 25.10 -2.72 -0.07 -2.24 15 19 C 0.03 1.63 5.35 83.57 0.45 2.08 15 20 H 0.26 14.78 8.31 -92.71 -0.77 14.01 15 21 H 0.03 1.61 8.11 -2.38 -0.02 1.59 15 22 H 0.08 2.97 8.14 -2.39 -0.02 2.95 15 23 H 0.06 2.51 7.87 -2.39 -0.02 2.49 15 24 H 0.10 2.70 8.01 -2.38 -0.02 2.68 15 25 H 0.04 1.57 6.91 -2.39 -0.02 1.55 15 26 H 0.19 3.40 8.06 -2.91 -0.02 3.38 15 27 H 0.19 3.64 8.06 -2.91 -0.02 3.62 15 28 H 0.05 2.42 6.55 -2.39 -0.02 2.41 15 29 H 0.04 1.98 7.83 -2.39 -0.02 1.96 15 Total: -1.00 -62.92 273.62 -0.22 -63.14 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 1.15 Total: 5.06 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.60 Total: -34.13 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -5.61 Total: -79.92 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.32 Total: 2.20 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.07 Total: -2.24 kcal Total: -62.92 -0.22 -63.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194352.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.200 kcal (2) G-P(sol) polarization free energy of solvation -62.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds