Wall clock time and date at job start Mon Mar 30 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38409 * 120.43961 * 2 1 4 4 C 1.38872 * 118.47479 * 180.24519 * 3 2 1 5 5 Br 1.89098 * 120.35842 * 179.72644 * 4 3 2 6 6 C 1.38247 * 119.28236 * 359.74442 * 4 3 2 7 7 N 1.31875 * 120.82811 * 0.02562 * 6 4 3 8 8 C 1.32351 * 121.65500 * 0.02562 * 7 6 4 9 9 O 1.35594 * 119.68169 * 179.97438 * 8 7 6 10 10 C 1.34853 * 116.99850 * 359.97438 * 9 8 7 11 11 H 1.07997 * 119.99798 * 359.73279 * 10 9 8 12 12 C 1.38665 * 119.99855 * 179.97438 * 10 9 8 13 13 N 1.31539 * 119.99867 * 359.72662 * 12 10 9 14 14 Si 1.86798 * 119.99740 * 179.72883 * 12 10 9 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00313 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99872 * 14 12 10 18 18 H 1.08994 * 109.47538 * 270.25694 * 1 2 3 19 19 H 1.08998 * 109.47224 * 30.25957 * 1 2 3 20 20 H 1.09002 * 109.47052 * 150.25246 * 1 2 3 21 21 H 1.07994 * 120.76012 * 359.96849 * 3 2 1 22 22 H 1.08003 * 119.58575 * 180.02562 * 6 4 3 23 23 H 0.97000 * 120.00170 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1933 0.0000 4 6 3.5961 1.1457 -0.0052 5 35 4.6072 2.7437 -0.0133 6 6 4.2305 -0.0826 -0.0048 7 7 3.5346 -1.2027 -0.0001 8 6 2.2111 -1.1981 0.0039 9 8 1.5356 -2.3738 0.0082 10 6 2.2724 -3.5032 0.0075 11 1 3.3507 -3.4444 -0.0007 12 6 1.6455 -4.7400 0.0123 13 7 0.3321 -4.8116 0.0229 14 14 2.6661 -6.3045 0.0037 15 1 4.1091 -5.9541 -0.0085 16 1 2.3601 -7.1019 1.2184 17 1 2.3405 -7.1012 -1.2065 18 1 -0.3634 0.0046 1.0276 19 1 -0.3633 0.8876 -0.5178 20 1 -0.3633 -0.8923 -0.5099 21 1 1.6879 2.1397 -0.0005 22 1 5.3097 -0.1253 -0.0085 23 1 -0.1065 -5.6768 0.0266 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694948684.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:29 Heat of formation + Delta-G solvation = -19.553945 kcal Electronic energy + Delta-G solvation = -11604.794662 eV Core-core repulsion = 9271.106822 eV Total energy + Delta-G solvation = -2333.687840 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.46309 -38.78373 -34.66816 -34.36175 -33.14665 -30.09187 -28.15239 -27.35311 -24.12947 -22.78384 -20.31617 -18.97293 -17.44178 -16.56640 -16.33443 -15.93394 -15.24709 -14.95091 -14.20608 -14.01995 -13.66661 -13.59779 -13.27309 -12.79356 -12.71979 -12.12351 -11.96995 -11.88038 -11.30509 -10.81140 -10.46311 -10.31783 -9.20397 -8.53109 -6.18667 0.14464 0.33061 0.70356 1.35493 1.42115 1.54133 2.14871 2.66187 3.03198 3.09006 3.59821 3.93960 4.06907 4.22771 4.57793 4.68979 4.81509 4.98079 5.05965 5.25896 5.32601 5.67249 5.98327 6.83747 7.11688 7.57879 8.67936 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.047021 B = 0.005826 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.337894 B = 4805.225225 C = 5385.408832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.195 4.195 3 C -0.005 4.005 4 C -0.222 4.222 5 Br -0.030 7.030 6 C 0.166 3.834 7 N -0.566 5.566 8 C 0.298 3.702 9 O -0.195 6.195 10 C -0.399 4.399 11 H 0.102 0.898 12 C -0.018 4.018 13 N -0.911 5.911 14 Si 1.020 2.980 15 H -0.258 1.258 16 H -0.265 1.265 17 H -0.266 1.266 18 H 0.069 0.931 19 H 0.096 0.904 20 H 0.043 0.957 21 H 0.172 0.828 22 H 0.176 0.824 23 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.517 13.908 -0.082 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.200 4.200 3 C -0.031 4.031 4 C -0.305 4.305 5 Br 0.054 6.946 6 C 0.006 3.994 7 N -0.294 5.294 8 C 0.118 3.882 9 O -0.092 6.092 10 C -0.476 4.476 11 H 0.119 0.881 12 C -0.217 4.217 13 N -0.548 5.548 14 Si 0.839 3.161 15 H -0.182 1.182 16 H -0.190 1.190 17 H -0.190 1.190 18 H 0.088 0.912 19 H 0.115 0.885 20 H 0.063 0.937 21 H 0.190 0.810 22 H 0.193 0.807 23 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.770 13.420 -0.084 15.031 hybrid contribution -0.299 -0.511 0.011 0.592 sum 6.471 12.909 -0.073 14.440 Atomic orbital electron populations 1.20436 0.88617 1.02781 1.02484 1.20065 0.98603 0.90036 1.11288 1.21340 0.91711 0.97834 0.92192 1.22484 0.95469 0.93167 1.19382 1.96568 1.71172 1.28655 1.98233 1.22775 1.00483 0.85368 0.90809 1.67460 1.07924 1.31990 1.21995 1.20600 0.87923 0.87984 0.91680 1.84124 1.34721 1.11739 1.78626 1.21805 0.92239 0.81384 1.52177 0.88052 1.26578 0.97566 1.01872 0.95661 1.70152 1.09636 1.27136 1.47918 0.84508 0.77799 0.75015 0.78755 1.18191 1.19021 1.19039 0.91230 0.88550 0.93746 0.81028 0.80691 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.00 9.81 71.24 0.70 -2.30 14 2 C -0.20 -7.76 5.91 -19.65 -0.12 -7.87 14 3 C -0.01 -0.16 9.62 22.46 0.22 0.06 14 4 C -0.22 -7.03 6.25 22.42 0.14 -6.89 14 5 Br -0.03 -0.72 33.73 -20.37 -0.69 -1.41 14 6 C 0.17 6.04 10.94 84.69 0.93 6.97 14 7 N -0.57 -26.40 8.65 -308.79 -2.67 -29.08 14 8 C 0.30 14.73 7.42 84.79 0.63 15.35 14 9 O -0.20 -11.46 8.81 -21.26 -0.19 -11.65 14 10 C -0.40 -23.55 9.64 67.92 0.65 -22.89 14 11 H 0.10 5.86 6.70 -2.91 -0.02 5.85 14 12 C -0.02 -1.02 5.49 84.84 0.47 -0.55 14 13 N -0.91 -54.33 13.67 21.61 0.30 -54.04 14 14 Si 1.02 43.34 29.55 68.60 2.03 45.37 14 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 14 16 H -0.27 -10.69 7.11 99.48 0.71 -9.99 14 17 H -0.27 -10.71 7.11 99.48 0.71 -10.00 14 18 H 0.07 2.30 8.14 -2.39 -0.02 2.28 14 19 H 0.10 2.53 8.10 -2.39 -0.02 2.51 14 20 H 0.04 1.83 7.55 -2.39 -0.02 1.81 14 21 H 0.17 4.08 8.06 -2.91 -0.02 4.05 14 22 H 0.18 5.25 8.06 -2.91 -0.02 5.23 14 23 H 0.28 14.97 8.31 -92.71 -0.77 14.20 14 Total: -1.00 -66.44 235.73 3.62 -62.83 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.23 Total: 6.10 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 3.61 Total: -18.13 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -2.38 Total: -83.11 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.19 Total: -11.65 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -0.69 Total: -1.41 kcal Total: -66.44 3.62 -62.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694948684.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.271 kcal (2) G-P(sol) polarization free energy of solvation -66.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds