Wall clock time and date at job start Mon Mar 30 2020 06:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81408 * 102.99864 * 2 1 4 4 C 1.53000 * 109.46799 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 N 1.29031 * 124.91736 * 89.99650 * 6 5 4 8 8 C 1.31780 * 117.12711 * 179.97438 * 7 6 5 9 9 C 1.50702 * 122.74877 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46981 * 265.00174 * 9 8 7 11 11 H 1.08000 * 119.99652 * 0.02562 * 10 9 8 12 12 C 1.37872 * 119.99977 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00027 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99783 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46959 * 60.00339 * 14 12 10 16 16 H 1.48497 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47468 * 299.99952 * 14 12 10 18 18 C 1.33637 * 114.50002 * 0.02562 * 8 7 6 19 19 S 1.70980 * 124.91855 * 269.69899 * 6 5 4 20 20 H 1.09007 * 109.47294 * 299.99976 * 1 2 3 21 21 H 1.08997 * 109.47110 * 59.99656 * 1 2 3 22 22 H 1.08996 * 109.47473 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46823 * 60.00210 * 3 2 1 24 24 H 1.08992 * 109.47429 * 300.00246 * 3 2 1 25 25 H 1.09002 * 109.47398 * 300.00340 * 4 3 2 26 26 H 1.09001 * 109.47194 * 60.00520 * 4 3 2 27 27 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 29 29 H 1.09000 * 109.47097 * 24.99608 * 9 8 7 30 30 H 1.08998 * 109.46894 * 145.00235 * 9 8 7 31 31 H 0.97003 * 120.00314 * 180.02562 * 13 12 10 32 32 H 1.07997 * 126.03814 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4307 0.0013 6 6 5.5839 3.6006 0.0013 7 7 6.3177 3.6843 -1.0567 8 6 7.6149 3.8320 -0.8781 9 6 8.5881 3.9435 -2.0234 10 6 9.1661 2.5849 -2.3255 11 1 8.8591 1.7265 -1.7463 12 6 10.0860 2.4375 -3.3418 13 7 10.4594 3.4827 -4.0473 14 14 10.8030 0.7536 -3.7158 15 1 9.7083 -0.1796 -4.0846 16 1 11.7618 0.8634 -4.8444 17 1 11.5092 0.2385 -2.5153 18 6 7.9968 3.8747 0.4018 19 16 6.5556 3.7177 1.4033 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8031 2.2371 0.8900 24 1 1.8031 2.2372 -0.8899 25 1 4.1609 1.4704 0.8908 26 1 4.1616 1.4703 -0.8892 27 1 3.6679 3.9007 -0.8887 28 1 3.6673 3.9001 0.8912 29 1 8.0702 4.3220 -2.9046 30 1 9.3917 4.6280 -1.7520 31 1 11.1063 3.3790 -4.7627 32 1 9.0093 3.9902 0.7593 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696076176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:13 Heat of formation + Delta-G solvation = 18.330832 kcal Electronic energy + Delta-G solvation = -14027.081037 eV Core-core repulsion = 11625.926457 eV Total energy + Delta-G solvation = -2401.154580 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.21039 -35.36105 -33.14019 -30.91673 -29.26180 -28.15772 -26.96995 -24.00280 -22.58637 -21.00040 -19.09952 -16.99872 -16.34831 -16.28113 -15.53995 -14.86827 -14.46807 -14.45972 -13.93993 -13.77901 -13.30106 -13.06287 -12.85779 -12.21285 -12.12160 -11.75824 -11.66663 -11.33238 -11.05982 -10.88057 -10.68995 -10.47063 -10.17412 -9.74678 -9.47259 -8.99580 -8.80507 -8.41767 -7.92050 -7.88152 -6.04297 -4.07470 1.27549 1.51373 1.94560 2.33069 2.39292 3.33918 3.37339 3.40270 3.63637 4.38542 4.46262 4.70723 4.84819 4.86337 4.92305 5.10731 5.28683 5.31649 5.38358 5.43742 5.53796 5.89305 5.97434 6.07236 6.16800 6.34873 7.03337 7.47456 7.55581 7.90903 8.28622 8.55605 8.94918 9.55543 11.06094 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.004638 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.635361 B = 6035.232847 C = 7038.915559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.081 4.081 4 C -0.100 4.100 5 C -0.030 4.030 6 C 0.040 3.960 7 N -0.455 5.455 8 C 0.111 3.889 9 C 0.084 3.916 10 C -0.511 4.511 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.259 4.259 19 S 0.047 5.953 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.099 0.901 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.065 -1.453 10.851 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.229 4.229 4 C -0.140 4.140 5 C -0.073 4.073 6 C -0.239 4.239 7 N -0.170 5.170 8 C -0.018 4.018 9 C 0.045 3.955 10 C -0.549 4.549 11 H 0.073 0.927 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.397 4.397 19 S 0.300 5.700 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.118 0.882 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.726 -2.311 11.259 20.295 hybrid contribution 0.256 0.136 -0.912 0.957 sum -16.471 -2.175 10.347 19.572 Atomic orbital electron populations 1.23366 0.94552 1.06412 1.04780 1.87132 1.06867 1.11786 1.98063 1.23402 1.00437 0.94014 1.05041 1.21327 0.92165 0.95826 1.04633 1.20100 0.86822 0.96517 1.03852 1.26779 1.00597 1.05486 0.91043 1.66186 1.05775 1.14256 1.30764 1.21240 0.89516 0.95204 0.95852 1.17997 0.90380 0.98130 0.89016 1.20941 1.23806 0.93240 1.16939 0.92675 1.24965 0.96426 0.96978 0.95787 1.69938 1.32661 1.29329 1.21359 0.86564 0.78910 0.84152 0.77886 1.20109 1.21140 1.20164 1.26701 1.01697 1.16019 0.95270 1.83477 1.01308 1.70720 1.14526 0.90624 0.90517 0.88196 0.89958 0.89709 0.90632 0.89828 0.88906 0.90009 0.94323 0.94499 0.92704 0.81091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.76 101.05 1.09 0.21 16 2 S -0.26 -2.89 22.38 -107.50 -2.41 -5.30 16 3 C -0.08 -0.77 5.94 37.16 0.22 -0.55 16 4 C -0.10 -1.19 5.20 -26.73 -0.14 -1.33 16 5 C -0.03 -0.37 5.80 -27.89 -0.16 -0.53 16 6 C 0.04 0.69 6.64 -13.46 -0.09 0.60 16 7 N -0.46 -9.84 10.53 -8.06 -0.08 -9.93 16 8 C 0.11 2.56 5.93 -84.23 -0.50 2.06 16 9 C 0.08 2.26 5.39 -29.03 -0.16 2.10 16 10 C -0.51 -14.71 9.09 -34.44 -0.31 -15.02 16 11 H 0.05 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 14 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.26 -5.14 11.14 29.12 0.32 -4.82 16 19 S 0.05 0.75 23.18 -107.50 -2.49 -1.74 16 20 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 21 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.17 3.14 8.06 -52.49 -0.42 2.72 16 LS Contribution 305.25 15.07 4.60 4.60 Total: -1.00 -31.47 305.25 -9.11 -40.58 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -4.61 Total: -3.54 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 0.18 Total: -15.65 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.65 Total: -35.87 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -4.90 Total: -7.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.47 -9.11 -40.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696076176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.908 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds