Wall clock time and date at job start Mon Mar 30 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81408 * 102.99864 * 2 1 4 4 C 1.53000 * 109.46799 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 N 1.29031 * 124.91736 * 89.99650 * 6 5 4 8 8 C 1.31780 * 117.12711 * 179.97438 * 7 6 5 9 9 C 1.50702 * 122.74877 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46981 * 265.00174 * 9 8 7 11 11 H 1.08000 * 119.99652 * 0.02562 * 10 9 8 12 12 C 1.37872 * 119.99977 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00027 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99783 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46959 * 60.00339 * 14 12 10 16 16 H 1.48497 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47468 * 299.99952 * 14 12 10 18 18 C 1.33637 * 114.50002 * 0.02562 * 8 7 6 19 19 S 1.70980 * 124.91855 * 269.69899 * 6 5 4 20 20 H 1.09007 * 109.47294 * 299.99976 * 1 2 3 21 21 H 1.08997 * 109.47110 * 59.99656 * 1 2 3 22 22 H 1.08996 * 109.47473 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46823 * 60.00210 * 3 2 1 24 24 H 1.08992 * 109.47429 * 300.00246 * 3 2 1 25 25 H 1.09002 * 109.47398 * 300.00340 * 4 3 2 26 26 H 1.09001 * 109.47194 * 60.00520 * 4 3 2 27 27 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 29 29 H 1.09000 * 109.47097 * 24.99608 * 9 8 7 30 30 H 1.08998 * 109.46894 * 145.00235 * 9 8 7 31 31 H 0.97003 * 120.00314 * 180.02562 * 13 12 10 32 32 H 1.07997 * 126.03814 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4307 0.0013 6 6 5.5839 3.6006 0.0013 7 7 6.3177 3.6843 -1.0567 8 6 7.6149 3.8320 -0.8781 9 6 8.5881 3.9435 -2.0234 10 6 9.1661 2.5849 -2.3255 11 1 8.8591 1.7265 -1.7463 12 6 10.0860 2.4375 -3.3418 13 7 10.4594 3.4827 -4.0473 14 14 10.8030 0.7536 -3.7158 15 1 9.7083 -0.1796 -4.0846 16 1 11.7618 0.8634 -4.8444 17 1 11.5092 0.2385 -2.5153 18 6 7.9968 3.8747 0.4018 19 16 6.5556 3.7177 1.4033 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8031 2.2371 0.8900 24 1 1.8031 2.2372 -0.8899 25 1 4.1609 1.4704 0.8908 26 1 4.1616 1.4703 -0.8892 27 1 3.6679 3.9007 -0.8887 28 1 3.6673 3.9001 0.8912 29 1 8.0702 4.3220 -2.9046 30 1 9.3917 4.6280 -1.7520 31 1 11.1063 3.3790 -4.7627 32 1 9.0093 3.9902 0.7593 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696076176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:12 Heat of formation + Delta-G solvation = -0.444220 kcal Electronic energy + Delta-G solvation = -14027.895185 eV Core-core repulsion = 11625.926457 eV Total energy + Delta-G solvation = -2401.968728 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.75212 -36.46728 -35.19835 -32.53976 -30.01083 -29.59045 -28.42012 -25.87164 -23.94090 -22.23741 -20.61725 -18.61638 -18.38958 -17.24303 -16.66528 -16.43306 -15.99014 -15.68931 -14.86132 -14.59032 -14.56070 -14.30484 -14.02754 -13.97512 -13.60642 -13.17530 -12.98486 -12.75358 -12.59589 -12.42883 -12.32245 -11.83131 -11.65373 -11.60007 -10.91356 -10.64623 -10.45594 -10.24689 -9.46029 -8.70205 -8.24444 -6.37474 -0.12254 0.55309 0.76096 0.83837 1.37035 1.40701 1.48773 1.71427 2.00566 2.40479 3.06163 3.20562 3.84153 3.93183 4.13822 4.35037 4.36833 4.41893 4.44243 4.47992 4.58880 4.68886 4.78886 4.90768 5.04634 5.15862 5.19764 5.35538 5.48045 5.67319 6.10027 6.71138 7.02967 7.30354 8.85692 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.004638 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.635361 B = 6035.232847 C = 7038.915559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 S -0.338 6.338 3 C -0.063 4.063 4 C -0.093 4.093 5 C -0.029 4.029 6 C 0.038 3.962 7 N -0.503 5.503 8 C 0.079 3.921 9 C 0.093 3.907 10 C -0.530 4.530 11 H 0.048 0.952 12 C 0.008 3.992 13 N -0.927 5.927 14 Si 0.967 3.033 15 H -0.273 1.273 16 H -0.275 1.275 17 H -0.264 1.264 18 C -0.278 4.278 19 S 0.148 5.852 20 H 0.092 0.908 21 H 0.085 0.915 22 H 0.107 0.893 23 H 0.109 0.891 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.002 0.998 30 H 0.019 0.981 31 H 0.268 0.732 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.892 -2.143 12.833 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 S -0.112 6.112 3 C -0.211 4.211 4 C -0.133 4.133 5 C -0.071 4.071 6 C -0.240 4.240 7 N -0.219 5.219 8 C -0.051 4.051 9 C 0.054 3.946 10 C -0.569 4.569 11 H 0.067 0.933 12 C -0.190 4.190 13 N -0.567 5.567 14 Si 0.791 3.209 15 H -0.198 1.198 16 H -0.200 1.200 17 H -0.189 1.189 18 C -0.416 4.416 19 S 0.402 5.598 20 H 0.110 0.890 21 H 0.104 0.896 22 H 0.126 0.874 23 H 0.128 0.872 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.116 0.884 28 H 0.140 0.860 29 H 0.021 0.979 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -18.565 -2.993 13.265 23.013 hybrid contribution 0.711 0.380 -1.430 1.642 sum -17.854 -2.613 11.835 21.579 Atomic orbital electron populations 1.23397 0.90477 1.07371 1.06047 1.87397 1.11477 1.14101 1.98267 1.23302 0.98396 0.92603 1.06813 1.21206 0.94062 0.95139 1.02903 1.20350 0.83650 0.97030 1.06097 1.27621 1.02606 1.02765 0.91017 1.66111 1.05472 1.16969 1.33358 1.20700 0.90050 0.98582 0.95741 1.17629 0.90620 0.96844 0.89542 1.21212 1.24400 0.93880 1.17374 0.93338 1.25888 0.96614 1.01169 0.95365 1.70058 1.33178 1.31619 1.21820 0.85474 0.78219 0.78962 0.78255 1.19811 1.20013 1.18911 1.26883 1.04249 1.14808 0.95633 1.83026 0.97118 1.68436 1.11210 0.88953 0.89585 0.87435 0.87212 0.88804 0.90831 0.93205 0.88410 0.85956 0.97933 0.96257 0.92328 0.80457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.76 113.37 1.22 -0.01 16 2 S -0.34 -6.94 22.38 -56.49 -1.26 -8.21 16 3 C -0.06 -1.04 5.94 71.98 0.43 -0.61 16 4 C -0.09 -2.07 5.20 30.59 0.16 -1.91 16 5 C -0.03 -0.63 5.80 29.85 0.17 -0.46 16 6 C 0.04 1.25 6.64 88.52 0.59 1.84 16 7 N -0.50 -22.17 10.53 -179.40 -1.89 -24.06 16 8 C 0.08 3.77 5.93 41.52 0.25 4.02 16 9 C 0.09 5.30 5.39 29.10 0.16 5.46 16 10 C -0.53 -31.75 9.09 25.60 0.23 -31.52 16 11 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 12 C 0.01 0.49 5.46 84.65 0.46 0.95 16 13 N -0.93 -57.01 13.29 21.44 0.28 -56.73 16 14 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 15 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 18 C -0.28 -10.98 11.14 66.78 0.74 -10.24 16 19 S 0.15 4.31 23.18 -56.49 -1.31 3.00 16 20 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 21 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.18 6.55 8.06 -2.91 -0.02 6.52 16 Total: -1.00 -71.67 305.25 3.35 -68.33 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.09 Total: 2.54 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 4.41 Total: -32.48 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.60 Total: -80.79 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.57 Total: -5.20 kcal Total: -71.67 3.35 -68.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696076176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.881 kcal (2) G-P(sol) polarization free energy of solvation -71.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds