Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35252 * 117.00065 * 2 1 4 4 C 1.46609 * 120.59887 * 269.98490 * 3 2 1 5 5 C 1.39654 * 120.63284 * 359.97438 * 4 3 2 6 6 H 1.07995 * 120.00506 * 335.84431 * 5 4 3 7 7 C 1.46647 * 119.99833 * 155.84430 * 5 4 3 8 8 N 1.29462 * 120.00018 * 344.69469 * 7 5 4 9 9 Si 1.86801 * 120.00032 * 164.70011 * 7 5 4 10 10 H 1.48503 * 109.46978 * 60.00232 * 9 7 5 11 11 H 1.48498 * 109.47229 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47384 * 300.00268 * 9 7 5 13 13 C 1.41563 * 118.73346 * 180.02562 * 4 3 2 14 14 C 1.36090 * 119.81656 * 359.97438 * 13 4 3 15 15 Cl 1.73597 * 119.38224 * 180.02562 * 14 13 4 16 16 C 1.39180 * 121.23726 * 0.02562 * 14 13 4 17 17 C 1.37998 * 121.34120 * 359.97438 * 16 14 13 18 18 N 1.48017 * 119.96953 * 180.27784 * 17 16 14 19 19 O 1.31705 * 119.99805 * 359.72765 * 18 17 16 20 20 O 1.31698 * 120.00240 * 179.72573 * 18 17 16 21 21 H 1.09005 * 109.46574 * 299.99200 * 1 2 3 22 22 H 1.08990 * 109.47359 * 59.99157 * 1 2 3 23 23 H 1.08995 * 109.47053 * 179.97438 * 1 2 3 24 24 H 0.97000 * 119.99890 * 180.02562 * 8 7 5 25 25 H 1.07993 * 120.09077 * 179.97438 * 13 4 3 26 26 H 1.08004 * 119.32852 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0431 1.2051 0.0000 4 6 2.3822 1.8699 -1.2619 5 6 2.0778 1.2706 -2.4861 6 1 1.9617 0.1988 -2.5486 7 6 1.9159 2.0969 -3.6868 8 7 1.7589 3.3771 -3.5752 9 14 1.9362 1.3022 -5.3772 10 1 0.8336 0.3120 -5.4718 11 1 1.7537 2.3463 -6.4172 12 1 3.2366 0.6165 -5.5863 13 6 3.0250 3.1303 -1.2159 14 6 3.3144 3.6988 -0.0137 15 17 4.1022 5.2451 0.0296 16 6 2.9904 3.0637 1.1816 17 6 2.3634 1.8345 1.1944 18 7 2.0273 1.1892 2.4834 19 8 2.3314 1.7859 3.6175 20 8 1.4241 0.0186 2.4963 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5139 -0.8898 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6514 3.9236 -4.3694 25 1 3.2851 3.6393 -2.1321 26 1 3.2339 3.5432 2.1183 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705982169.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = -11.637732 kcal Electronic energy + Delta-G solvation = -16858.085326 eV Core-core repulsion = 13739.168445 eV Total energy + Delta-G solvation = -3118.916881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.25237 -37.50147 -36.74395 -35.51869 -34.29445 -33.50944 -30.87752 -29.61768 -26.75378 -25.65827 -25.09131 -21.51563 -21.07600 -18.63614 -17.39943 -16.94554 -16.42607 -15.84761 -15.29825 -15.12600 -14.59028 -14.40790 -13.46985 -13.21424 -12.59554 -12.51991 -12.01864 -11.74582 -11.39173 -11.26238 -10.91243 -10.76582 -10.53771 -10.48204 -10.34302 -10.19812 -9.91749 -9.88617 -9.15017 -8.51198 -7.94970 -7.58608 -5.04061 0.24552 1.89222 2.00172 2.28120 2.66834 2.69855 2.74873 2.89760 3.37276 3.72920 4.37824 4.85109 5.64041 5.86469 5.93356 6.00917 6.03778 6.11684 6.20808 6.26045 6.55686 6.62239 6.95412 7.07115 7.23071 7.62263 7.68528 7.87567 7.95119 8.40989 9.24362 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.009530 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.366159 B = 2937.449361 C = 4389.515090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.305 6.305 3 C 0.016 3.984 4 C 0.098 3.902 5 C -0.399 4.399 6 H 0.106 0.894 7 C 0.067 3.933 8 N -0.732 5.732 9 Si 0.932 3.068 10 H -0.254 1.254 11 H -0.270 1.270 12 H -0.252 1.252 13 C -0.141 4.141 14 C 0.015 3.985 15 Cl -0.096 7.096 16 C -0.217 4.217 17 C 0.045 3.955 18 N -0.004 5.004 19 O -0.221 6.221 20 O -0.172 6.172 21 H 0.033 0.967 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.303 0.697 25 H 0.146 0.854 26 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 0.558 -3.866 3.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.221 6.221 3 C -0.032 4.032 4 C 0.093 3.907 5 C -0.423 4.423 6 H 0.124 0.876 7 C -0.163 4.163 8 N -0.350 5.350 9 Si 0.754 3.246 10 H -0.178 1.178 11 H -0.195 1.195 12 H -0.176 1.176 13 C -0.161 4.161 14 C -0.013 4.013 15 Cl -0.068 7.068 16 C -0.238 4.238 17 C -0.042 4.042 18 N 0.470 4.530 19 O -0.406 6.406 20 O -0.369 6.369 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.102 0.898 24 H 0.116 0.884 25 H 0.164 0.836 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.167 1.082 -4.485 4.617 hybrid contribution -0.253 0.073 -0.151 0.303 sum -0.420 1.154 -4.636 4.796 Atomic orbital electron populations 1.22809 0.80640 1.01999 0.99612 1.85887 1.18895 1.23632 1.93664 1.19665 1.04023 0.90450 0.89092 1.18502 0.91298 0.90530 0.90368 1.20871 1.35726 0.95948 0.89738 0.87630 1.27758 0.90967 0.94409 1.03212 1.69028 1.23856 1.07060 1.35072 0.85923 0.81280 0.80121 0.77295 1.17808 1.19457 1.17596 1.21241 1.00893 0.97799 0.96161 1.19879 1.00310 0.87108 0.93983 1.98297 1.79740 1.29773 1.98965 1.19604 1.11288 0.94937 0.98020 1.20373 1.09491 0.95598 0.78734 1.50591 0.96684 1.01263 1.04444 1.96181 1.60182 1.65811 1.18390 1.96206 1.41129 1.03187 1.96345 0.94854 0.93817 0.89757 0.88360 0.83641 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.39 101.05 1.05 1.87 15 2 O -0.31 -6.88 8.27 -39.44 -0.33 -7.21 15 3 C 0.02 0.37 5.94 -36.02 -0.21 0.16 15 4 C 0.10 2.26 5.77 -104.73 -0.60 1.66 15 5 C -0.40 -8.71 9.07 -35.66 -0.32 -9.04 15 6 H 0.11 2.25 7.81 -52.49 -0.41 1.84 15 7 C 0.07 1.32 5.37 -15.16 -0.08 1.24 15 8 N -0.73 -14.80 10.94 55.99 0.61 -14.19 15 9 Si 0.93 14.66 29.67 -169.99 -5.04 9.62 15 10 H -0.25 -4.00 7.11 56.52 0.40 -3.59 15 11 H -0.27 -4.09 7.11 56.52 0.40 -3.69 15 12 H -0.25 -4.00 7.11 56.52 0.40 -3.60 15 13 C -0.14 -3.14 8.46 -39.09 -0.33 -3.47 15 14 C 0.01 0.32 6.26 -40.00 -0.25 0.07 15 15 Cl -0.10 -1.77 28.90 -51.86 -1.50 -3.27 15 16 C -0.22 -4.83 9.31 -39.32 -0.37 -5.19 15 17 C 0.05 1.07 6.89 -79.84 -0.55 0.52 15 18 N 0.00 -0.09 4.98 34.01 0.17 0.08 15 19 O -0.22 -5.25 19.12 -31.57 -0.60 -5.85 15 20 O -0.17 -4.07 16.65 -39.17 -0.65 -4.72 15 21 H 0.03 0.64 7.44 -51.93 -0.39 0.25 15 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.08 1.33 8.14 -51.93 -0.42 0.90 15 24 H 0.30 5.39 8.27 -40.82 -0.34 5.06 15 25 H 0.15 3.21 6.10 -52.49 -0.32 2.89 15 26 H 0.13 2.78 7.53 -52.48 -0.40 2.39 15 LS Contribution 260.75 15.07 3.93 3.93 Total: -1.00 -24.39 260.75 -6.57 -30.96 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -1.49 Total: 2.83 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.67 Total: -12.18 kcal Atomic # 7 Polarization: -14.88 SS G_CDS: 0.78 Total: -14.10 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.58 Total: -17.78 kcal Atomic # 14 Polarization: 14.66 SS G_CDS: -5.04 Total: 9.62 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.50 Total: -3.27 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -24.39 -6.57 -30.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705982169.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.321 kcal (2) G-P(sol) polarization free energy of solvation -24.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds