Wall clock time and date at job start Mon Mar 30 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00383 * 2 1 4 4 H 1.48493 * 109.47527 * 239.99987 * 3 2 1 5 5 H 1.48501 * 109.47406 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47371 * 119.99945 * 3 2 1 7 7 C 1.38815 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00399 * 200.50654 * 7 2 1 9 9 N 1.36936 * 119.99775 * 20.51345 * 7 2 1 10 10 C 1.46497 * 120.00239 * 38.09005 * 9 7 2 11 11 C 1.50703 * 109.47010 * 90.00443 * 10 9 7 12 12 C 1.33345 * 122.53665 * 89.97484 * 11 10 9 13 13 S 1.75883 * 109.62026 * 180.02562 * 12 11 10 14 14 C 1.75876 * 90.98257 * 0.02562 * 13 12 11 15 15 Cl 1.73598 * 125.20848 * 179.97438 * 14 13 12 16 16 C 1.33507 * 109.58152 * 0.22705 * 14 13 12 17 17 C 1.46510 * 119.99890 * 218.09347 * 9 7 2 18 18 C 1.53001 * 117.49578 * 13.97903 * 17 9 7 19 19 C 1.53004 * 117.49565 * 305.31845 * 17 9 7 20 20 H 0.97003 * 119.99573 * 354.96227 * 1 2 3 21 21 H 1.08998 * 109.47443 * 330.00495 * 10 9 7 22 22 H 1.09000 * 109.47471 * 209.99851 * 10 9 7 23 23 H 1.08005 * 125.19135 * 0.04587 * 12 11 10 24 24 H 1.08000 * 122.55727 * 179.75113 * 16 14 13 25 25 H 1.08995 * 115.54964 * 159.65154 * 17 9 7 26 26 H 1.09001 * 117.50003 * 359.97438 * 18 17 9 27 27 H 1.08997 * 117.49427 * 145.02301 * 18 17 9 28 28 H 1.09000 * 117.49444 * 214.98020 * 19 17 9 29 29 H 1.08997 * 117.49739 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0389 -1.2318 0.3282 9 7 1.3905 -2.3506 -0.4145 10 6 0.4593 -2.3131 -1.5448 11 6 1.2144 -2.5571 -2.8260 12 6 1.3992 -3.7785 -3.3281 13 16 2.3198 -3.6695 -4.8228 14 6 2.4055 -1.9188 -4.6779 15 17 3.1961 -0.8589 -5.8026 16 6 1.7742 -1.5303 -3.5675 17 6 1.6588 -3.6169 0.2718 18 6 2.3676 -3.5500 1.6261 19 6 3.1185 -4.0592 0.3931 20 1 -0.4850 0.8369 0.0738 21 1 -0.0218 -1.3360 -1.5870 22 1 -0.2986 -3.0860 -1.4170 23 1 1.0385 -4.6949 -2.8848 24 1 1.7029 -0.4940 -3.2718 25 1 0.9071 -4.3942 0.1351 26 1 2.6347 -2.5639 2.0062 27 1 2.0825 -4.2836 2.3801 28 1 3.3269 -5.1276 0.3365 29 1 3.8791 -3.4083 -0.0381 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706767378.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:05 Heat of formation + Delta-G solvation = 74.863158 kcal Electronic energy + Delta-G solvation = -14925.177836 eV Core-core repulsion = 12388.597880 eV Total energy + Delta-G solvation = -2536.579956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.07814 -36.74270 -36.11837 -33.34064 -30.84404 -28.79577 -25.94287 -24.12135 -21.98480 -21.37509 -19.94167 -18.52191 -17.38566 -16.30073 -15.39664 -15.00010 -14.46201 -13.82975 -13.47468 -13.14590 -12.77961 -12.55663 -12.15179 -11.84037 -11.24518 -11.16254 -10.91794 -10.85074 -10.60837 -10.59883 -10.40871 -10.15077 -10.00820 -9.67134 -9.32950 -8.52546 -8.17657 -7.87363 -6.56208 -5.92655 -3.47883 1.34935 1.56468 2.30757 2.68281 3.24268 3.31761 3.36777 3.40236 4.37318 4.93147 5.26418 5.29495 5.60647 5.83104 5.87843 6.07037 6.12331 6.20819 6.39352 6.47143 6.54750 6.60190 6.89057 6.96348 7.08750 7.16046 7.50712 7.74832 8.42167 9.05735 9.67415 10.24521 11.08951 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.009258 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.377483 B = 3023.558223 C = 4075.657297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.020 3.980 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.061 0.939 9 N -0.539 5.539 10 C 0.195 3.805 11 C -0.082 4.082 12 C -0.206 4.206 13 S 0.081 5.919 14 C -0.157 4.157 15 Cl -0.036 7.036 16 C -0.078 4.078 17 C 0.128 3.872 18 C -0.194 4.194 19 C -0.226 4.226 20 H 0.259 0.741 21 H 0.109 0.891 22 H 0.041 0.959 23 H 0.161 0.839 24 H 0.146 0.854 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -5.773 -7.183 9.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.181 4.181 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.390 4.390 8 H 0.079 0.921 9 N -0.254 5.254 10 C 0.067 3.933 11 C -0.097 4.097 12 C -0.342 4.342 13 S 0.341 5.659 14 C -0.299 4.299 15 Cl -0.007 7.007 16 C -0.111 4.111 17 C 0.019 3.981 18 C -0.233 4.233 19 C -0.267 4.267 20 H 0.070 0.930 21 H 0.126 0.874 22 H 0.060 0.940 23 H 0.179 0.821 24 H 0.163 0.837 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.626 -6.533 -8.394 10.956 hybrid contribution 0.296 1.968 0.985 2.221 sum 2.922 -4.565 -7.409 9.180 Atomic orbital electron populations 1.69861 1.05538 1.26459 1.50896 1.25187 0.95062 0.98631 0.99234 0.86496 0.79359 0.83154 0.78680 1.20489 1.21374 1.20537 1.18873 0.94196 0.84727 1.41183 0.92112 1.43296 1.50575 1.02610 1.28911 1.19847 0.89568 1.03598 0.80310 1.20129 1.00027 0.90678 0.98828 1.25408 1.07654 1.01742 0.99413 1.83896 1.56804 0.99657 1.25545 1.25035 1.10506 0.94846 0.99532 1.98316 1.78799 1.63810 1.59815 1.20264 0.96712 1.02189 0.91892 1.21113 0.91452 0.90514 0.95047 1.23078 1.06701 1.02083 0.91458 1.23350 0.99929 0.98919 1.04473 0.93031 0.87352 0.94042 0.82143 0.83674 0.89464 0.88300 0.90809 0.91007 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.92 11.45 55.49 0.64 -23.28 15 2 C 0.02 0.52 4.97 -17.43 -0.09 0.43 15 3 Si 0.89 20.79 29.60 -169.99 -5.03 15.76 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.26 -6.69 8.04 -15.06 -0.12 -6.81 15 8 H 0.06 1.61 7.23 -52.49 -0.38 1.23 15 9 N -0.54 -12.59 2.76 -167.02 -0.46 -13.06 15 10 C 0.20 4.26 5.58 -5.19 -0.03 4.23 15 11 C -0.08 -1.60 5.38 -106.24 -0.57 -2.17 15 12 C -0.21 -3.46 10.97 29.02 0.32 -3.15 15 13 S 0.08 1.25 23.34 -107.50 -2.51 -1.26 15 14 C -0.16 -2.74 7.10 29.08 0.21 -2.54 15 15 Cl -0.04 -0.56 29.29 -51.86 -1.52 -2.08 15 16 C -0.08 -1.52 9.93 -41.15 -0.41 -1.93 15 17 C 0.13 2.63 6.61 -67.92 -0.45 2.18 15 18 C -0.19 -3.81 9.81 -26.69 -0.26 -4.07 15 19 C -0.23 -4.28 10.09 -26.69 -0.27 -4.55 15 20 H 0.26 6.81 8.32 -40.82 -0.34 6.47 15 21 H 0.11 2.67 5.51 -51.93 -0.29 2.38 15 22 H 0.04 0.84 8.02 -51.93 -0.42 0.42 15 23 H 0.16 2.38 8.06 -52.48 -0.42 1.96 15 24 H 0.15 3.02 8.06 -52.49 -0.42 2.60 15 25 H 0.09 1.63 8.10 -51.93 -0.42 1.21 15 26 H 0.10 2.16 6.95 -51.93 -0.36 1.80 15 27 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 29 H 0.08 1.74 8.00 -51.93 -0.42 1.32 15 LS Contribution 280.78 15.07 4.23 4.23 Total: -1.00 -26.12 280.78 -9.43 -35.55 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.11 Total: 2.50 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.67 Total: -18.37 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.17 Total: -36.34 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.51 Total: -1.26 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.52 Total: -2.08 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.12 -9.43 -35.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706767378.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.415 kcal (2) G-P(sol) polarization free energy of solvation -26.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds