Wall clock time and date at job start Mon Mar 30 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00383 * 2 1 4 4 H 1.48493 * 109.47527 * 239.99987 * 3 2 1 5 5 H 1.48501 * 109.47406 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47371 * 119.99945 * 3 2 1 7 7 C 1.38815 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00399 * 200.50654 * 7 2 1 9 9 N 1.36936 * 119.99775 * 20.51345 * 7 2 1 10 10 C 1.46497 * 120.00239 * 38.09005 * 9 7 2 11 11 C 1.50703 * 109.47010 * 90.00443 * 10 9 7 12 12 C 1.33345 * 122.53665 * 89.97484 * 11 10 9 13 13 S 1.75883 * 109.62026 * 180.02562 * 12 11 10 14 14 C 1.75876 * 90.98257 * 0.02562 * 13 12 11 15 15 Cl 1.73598 * 125.20848 * 179.97438 * 14 13 12 16 16 C 1.33507 * 109.58152 * 0.22705 * 14 13 12 17 17 C 1.46510 * 119.99890 * 218.09347 * 9 7 2 18 18 C 1.53001 * 117.49578 * 13.97903 * 17 9 7 19 19 C 1.53004 * 117.49565 * 305.31845 * 17 9 7 20 20 H 0.97003 * 119.99573 * 354.96227 * 1 2 3 21 21 H 1.08998 * 109.47443 * 330.00495 * 10 9 7 22 22 H 1.09000 * 109.47471 * 209.99851 * 10 9 7 23 23 H 1.08005 * 125.19135 * 0.04587 * 12 11 10 24 24 H 1.08000 * 122.55727 * 179.75113 * 16 14 13 25 25 H 1.08995 * 115.54964 * 159.65154 * 17 9 7 26 26 H 1.09001 * 117.50003 * 359.97438 * 18 17 9 27 27 H 1.08997 * 117.49427 * 145.02301 * 18 17 9 28 28 H 1.09000 * 117.49444 * 214.98020 * 19 17 9 29 29 H 1.08997 * 117.49739 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0389 -1.2318 0.3282 9 7 1.3905 -2.3506 -0.4145 10 6 0.4593 -2.3131 -1.5448 11 6 1.2144 -2.5571 -2.8260 12 6 1.3992 -3.7785 -3.3281 13 16 2.3198 -3.6695 -4.8228 14 6 2.4055 -1.9188 -4.6779 15 17 3.1961 -0.8589 -5.8026 16 6 1.7742 -1.5303 -3.5675 17 6 1.6588 -3.6169 0.2718 18 6 2.3676 -3.5500 1.6261 19 6 3.1185 -4.0592 0.3931 20 1 -0.4850 0.8369 0.0738 21 1 -0.0218 -1.3360 -1.5870 22 1 -0.2986 -3.0860 -1.4170 23 1 1.0385 -4.6949 -2.8848 24 1 1.7029 -0.4940 -3.2718 25 1 0.9071 -4.3942 0.1351 26 1 2.6347 -2.5639 2.0062 27 1 2.0825 -4.2836 2.3801 28 1 3.3269 -5.1276 0.3365 29 1 3.8791 -3.4083 -0.0381 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706767378.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:05 Heat of formation + Delta-G solvation = 62.919127 kcal Electronic energy + Delta-G solvation = -14925.695768 eV Core-core repulsion = 12388.597880 eV Total energy + Delta-G solvation = -2537.097888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59671 -38.24823 -37.49694 -35.12085 -32.63278 -30.32492 -27.64440 -25.84287 -23.48366 -22.91247 -21.66241 -19.97761 -18.84295 -18.04987 -17.12165 -16.47700 -16.26313 -15.56135 -14.98355 -14.51526 -14.32820 -14.03474 -13.67783 -13.50591 -13.04343 -12.76224 -12.70198 -12.37361 -12.28366 -12.14503 -11.92981 -11.88379 -11.56295 -11.36582 -10.89701 -10.43639 -9.53721 -9.20520 -8.41643 -7.85711 -5.44760 -0.04123 0.23351 0.93695 1.33590 1.41641 1.45460 1.50284 1.78038 2.46694 3.16453 3.49305 3.64567 4.27558 4.32194 4.35690 4.51868 4.59922 4.63832 4.85229 4.98369 5.02743 5.09759 5.36092 5.40315 5.51614 5.58368 5.71317 5.82647 6.48248 7.15284 7.84350 8.35003 9.10646 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.009258 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.377483 B = 3023.558223 C = 4075.657297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.020 4.020 3 Si 0.940 3.060 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.046 0.954 9 N -0.555 5.555 10 C 0.200 3.800 11 C -0.106 4.106 12 C -0.196 4.196 13 S 0.157 5.843 14 C -0.167 4.167 15 Cl -0.023 7.023 16 C -0.103 4.103 17 C 0.108 3.892 18 C -0.196 4.196 19 C -0.205 4.205 20 H 0.255 0.745 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.186 0.814 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -7.931 -8.107 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.218 4.218 3 Si 0.769 3.231 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.064 0.936 9 N -0.271 5.271 10 C 0.072 3.928 11 C -0.120 4.120 12 C -0.332 4.332 13 S 0.418 5.582 14 C -0.310 4.310 15 Cl 0.006 6.994 16 C -0.136 4.136 17 C 0.000 4.000 18 C -0.235 4.235 19 C -0.246 4.246 20 H 0.065 0.935 21 H 0.093 0.907 22 H 0.071 0.929 23 H 0.203 0.797 24 H 0.137 0.863 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.396 -8.708 -9.327 13.205 hybrid contribution 0.110 2.533 1.187 2.800 sum 3.506 -6.175 -8.140 10.802 Atomic orbital electron populations 1.69964 1.06389 1.26451 1.52656 1.25644 0.95580 1.00661 0.99921 0.85770 0.78318 0.80718 0.78338 1.20774 1.21457 1.20335 1.18864 0.93581 0.86033 1.40174 0.93630 1.43442 1.50642 1.02932 1.30129 1.19609 0.89764 1.02124 0.81286 1.19780 1.01625 0.91867 0.98715 1.25710 1.06255 1.01564 0.99721 1.83652 1.54613 0.96615 1.23281 1.25246 1.09769 0.96873 0.99121 1.98318 1.78361 1.63788 1.58975 1.20098 0.98870 1.01239 0.93441 1.21406 0.93026 0.90035 0.95550 1.23069 1.06835 1.01481 0.92073 1.23274 0.97992 1.00271 1.03019 0.93546 0.90741 0.92944 0.79654 0.86337 0.87108 0.91329 0.87924 0.87620 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.82 11.45 21.65 0.25 -50.57 15 2 C -0.02 -1.06 4.97 84.86 0.42 -0.64 15 3 Si 0.94 43.94 29.60 68.60 2.03 45.97 15 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 15 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 7 C -0.26 -13.48 8.04 84.03 0.68 -12.80 15 8 H 0.05 2.50 7.23 -2.91 -0.02 2.48 15 9 N -0.56 -26.04 2.76 -682.32 -1.89 -27.92 15 10 C 0.20 8.81 5.58 85.63 0.48 9.29 15 11 C -0.11 -4.06 5.38 -20.92 -0.11 -4.18 15 12 C -0.20 -6.05 10.97 66.71 0.73 -5.32 15 13 S 0.16 4.35 23.34 -56.49 -1.32 3.03 15 14 C -0.17 -5.63 7.10 66.75 0.47 -5.16 15 15 Cl -0.02 -0.69 29.29 -2.72 -0.08 -0.77 15 16 C -0.10 -4.06 9.93 21.25 0.21 -3.85 15 17 C 0.11 4.27 6.61 44.99 0.30 4.57 15 18 C -0.20 -7.40 9.81 30.62 0.30 -7.10 15 19 C -0.21 -7.30 10.09 30.62 0.31 -6.99 15 20 H 0.26 13.87 8.32 -92.71 -0.77 13.10 15 21 H 0.07 3.81 5.51 -2.39 -0.01 3.80 15 22 H 0.05 2.11 8.02 -2.39 -0.02 2.09 15 23 H 0.19 4.73 8.06 -2.91 -0.02 4.71 15 24 H 0.12 5.20 8.06 -2.91 -0.02 5.17 15 25 H 0.11 3.83 8.10 -2.39 -0.02 3.81 15 26 H 0.07 3.01 6.95 -2.39 -0.02 3.00 15 27 H 0.10 3.25 8.14 -2.39 -0.02 3.23 15 28 H 0.11 3.06 8.14 -2.39 -0.02 3.04 15 29 H 0.06 2.46 8.00 -2.39 -0.02 2.44 15 Total: -1.00 -56.68 280.78 3.94 -52.74 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.16 Total: 9.68 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 3.79 Total: -32.17 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -1.64 Total: -78.49 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.32 Total: 3.03 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -56.68 3.94 -52.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706767378.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.661 kcal (2) G-P(sol) polarization free energy of solvation -56.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds