Wall clock time and date at job start Mon Mar 30 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.39743 * 119.99790 * 179.97438 * 12 11 10 14 14 C 1.38915 * 120.06591 * 359.73303 * 13 12 11 15 15 C 1.38123 * 119.98229 * 179.71660 * 14 13 12 16 16 C 1.38273 * 120.11415 * 0.55398 * 15 14 13 17 17 C 1.38483 * 120.13223 * 359.71843 * 16 15 14 18 18 F 1.35097 * 119.99143 * 179.97438 * 17 16 15 19 19 C 1.38424 * 120.01336 * 0.02562 * 17 16 15 20 20 Cl 1.73598 * 120.05917 * 180.02562 * 19 17 16 21 21 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 23 23 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 24 24 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 25 25 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 26 26 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 27 27 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 28 28 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 29 29 H 1.07992 * 120.00669 * 359.97438 * 14 13 12 30 30 H 1.07996 * 119.93968 * 180.24875 * 15 14 13 31 31 H 1.08000 * 119.93340 * 179.74410 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0398 -4.0178 -0.0015 13 6 7.4137 -4.2731 -0.0029 14 6 8.3176 -3.2183 -0.0107 15 6 9.6752 -3.4726 -0.0062 16 6 10.1369 -4.7759 -0.0055 17 6 9.2401 -5.8311 -0.0035 18 9 9.6943 -7.1035 -0.0034 19 6 7.8784 -5.5824 -0.0027 20 17 6.7530 -6.9043 0.0005 21 1 -0.4851 0.8401 0.0004 22 1 3.8752 -0.6804 0.8888 23 1 3.8744 -0.6801 -0.8912 24 1 3.6578 -3.1506 -0.8907 25 1 3.6585 -3.1501 0.8892 26 1 5.9156 -2.1223 0.8873 27 1 5.9141 -2.1230 -0.8927 28 1 5.4095 -4.7550 -0.0008 29 1 7.9589 -2.1997 -0.0160 30 1 10.3773 -2.6520 -0.0081 31 1 11.1991 -4.9714 -0.0062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709705160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:30 Heat of formation + Delta-G solvation = -41.857166 kcal Electronic energy + Delta-G solvation = -15940.197551 eV Core-core repulsion = 12968.176141 eV Total energy + Delta-G solvation = -2972.021410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.06268 -39.56755 -36.57160 -36.26004 -33.70814 -31.85800 -30.53853 -29.26462 -26.71314 -23.64600 -22.83949 -21.51843 -20.38695 -18.03313 -17.25183 -16.71832 -16.39157 -15.88867 -15.43405 -15.07650 -14.82519 -14.35058 -14.07266 -13.43785 -13.17093 -12.75032 -12.35282 -12.32977 -12.03796 -11.72248 -11.62450 -11.11378 -11.01924 -11.01477 -10.31083 -10.06864 -9.86501 -9.77444 -9.29604 -8.84310 -8.61272 -7.60777 -6.11186 -4.10510 0.89922 1.21478 2.00126 3.24962 3.25899 3.33389 3.35067 3.41946 4.11883 4.38344 4.65732 4.73188 5.08600 5.15251 5.22195 5.36415 5.47322 5.60128 5.81086 5.84234 5.87133 6.19731 6.30185 6.32309 6.55618 6.67777 7.09884 7.14704 7.27107 7.58067 7.69916 8.45095 8.92825 9.50270 11.02143 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.037255 B = 0.004002 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.403215 B = 6994.203549 C = 7719.856313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.729 5.729 13 C 0.262 3.738 14 C -0.202 4.202 15 C -0.036 4.036 16 C -0.215 4.215 17 C 0.156 3.844 18 F -0.131 7.131 19 C -0.165 4.165 20 Cl -0.057 7.057 21 H 0.264 0.736 22 H 0.018 0.982 23 H 0.014 0.986 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.405 0.595 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.071 -8.638 0.009 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.355 5.355 13 C 0.152 3.848 14 C -0.225 4.225 15 C -0.055 4.055 16 C -0.236 4.236 17 C 0.136 3.864 18 F -0.109 7.109 19 C -0.198 4.198 20 Cl -0.029 7.029 21 H 0.074 0.926 22 H 0.037 0.963 23 H 0.032 0.968 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.241 0.759 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 19.705 -8.465 0.012 21.446 hybrid contribution 0.002 0.247 -0.018 0.247 sum 19.707 -8.218 -0.006 21.352 Atomic orbital electron populations 1.69911 1.06343 1.27006 1.50778 1.25035 0.94750 0.99234 0.94444 0.86764 0.80327 0.83553 0.78540 1.20232 1.21323 1.18988 1.21088 0.89283 0.94568 1.51277 0.91015 1.19491 0.97420 0.91239 0.96550 1.21691 0.90363 1.01142 1.02040 1.21777 0.96985 0.80955 1.01142 1.45238 1.02377 1.09395 1.78443 1.17394 0.85741 0.90510 0.91170 1.20759 0.92446 0.98348 1.10918 1.20818 0.94953 0.95910 0.93792 1.20790 0.99500 0.91569 1.11788 1.17109 0.89927 0.79400 0.99989 1.91512 1.89310 1.36587 1.93491 1.20292 0.89509 0.88653 1.21321 1.98351 1.60851 1.46149 1.97527 0.92635 0.96329 0.96759 0.91999 0.91965 0.91914 0.91915 0.75851 0.84387 0.84616 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -5.99 6.54 56.52 0.37 -5.63 16 7 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.20 4.04 -27.89 -0.11 -0.32 16 10 C -0.11 -2.05 5.27 -26.74 -0.14 -2.20 16 11 C 0.11 1.64 4.91 -4.04 -0.02 1.62 16 12 N -0.73 -9.81 5.69 -58.60 -0.33 -10.14 16 13 C 0.26 3.35 6.65 -83.74 -0.56 2.79 16 14 C -0.20 -2.23 9.31 -39.37 -0.37 -2.59 16 15 C -0.04 -0.33 10.04 -39.61 -0.40 -0.73 16 16 C -0.22 -2.13 10.02 -39.48 -0.40 -2.53 16 17 C 0.16 1.89 7.27 -39.42 -0.29 1.60 16 18 F -0.13 -1.64 16.84 2.25 0.04 -1.60 16 19 C -0.16 -2.13 6.34 -39.26 -0.25 -2.38 16 20 Cl -0.06 -0.73 27.25 -51.86 -1.41 -2.15 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 23 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 0.86 7.96 -51.93 -0.41 0.45 16 27 H 0.06 0.86 7.94 -51.93 -0.41 0.45 16 28 H 0.40 5.41 7.15 -40.82 -0.29 5.12 16 29 H 0.14 1.40 6.73 -52.49 -0.35 1.05 16 30 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 284.19 15.07 4.28 4.28 Total: -1.00 -29.59 284.19 -7.79 -37.38 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.51 Total: 0.21 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.96 Total: -17.74 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.44 Total: -36.74 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.41 Total: -2.15 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.59 -7.79 -37.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709705160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.480 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds