Wall clock time and date at job start Mon Mar 30 2020 07:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.39743 * 119.99790 * 179.97438 * 12 11 10 14 14 C 1.38915 * 120.06591 * 359.73303 * 13 12 11 15 15 C 1.38123 * 119.98229 * 179.71660 * 14 13 12 16 16 C 1.38273 * 120.11415 * 0.55398 * 15 14 13 17 17 C 1.38483 * 120.13223 * 359.71843 * 16 15 14 18 18 F 1.35097 * 119.99143 * 179.97438 * 17 16 15 19 19 C 1.38424 * 120.01336 * 0.02562 * 17 16 15 20 20 Cl 1.73598 * 120.05917 * 180.02562 * 19 17 16 21 21 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 23 23 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 24 24 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 25 25 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 26 26 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 27 27 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 28 28 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 29 29 H 1.07992 * 120.00669 * 359.97438 * 14 13 12 30 30 H 1.07996 * 119.93968 * 180.24875 * 15 14 13 31 31 H 1.08000 * 119.93340 * 179.74410 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0398 -4.0178 -0.0015 13 6 7.4137 -4.2731 -0.0029 14 6 8.3176 -3.2183 -0.0107 15 6 9.6752 -3.4726 -0.0062 16 6 10.1369 -4.7759 -0.0055 17 6 9.2401 -5.8311 -0.0035 18 9 9.6943 -7.1035 -0.0034 19 6 7.8784 -5.5824 -0.0027 20 17 6.7530 -6.9043 0.0005 21 1 -0.4851 0.8401 0.0004 22 1 3.8752 -0.6804 0.8888 23 1 3.8744 -0.6801 -0.8912 24 1 3.6578 -3.1506 -0.8907 25 1 3.6585 -3.1501 0.8892 26 1 5.9156 -2.1223 0.8873 27 1 5.9141 -2.1230 -0.8927 28 1 5.4095 -4.7550 -0.0008 29 1 7.9589 -2.1997 -0.0160 30 1 10.3773 -2.6520 -0.0081 31 1 11.1991 -4.9714 -0.0062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709705160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:29 Heat of formation + Delta-G solvation = -59.051266 kcal Electronic energy + Delta-G solvation = -15940.943143 eV Core-core repulsion = 12968.176141 eV Total energy + Delta-G solvation = -2972.767002 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.97120 -40.44845 -37.54545 -37.37516 -35.39844 -33.58992 -31.42791 -30.44220 -28.16917 -24.98139 -23.82883 -22.61341 -21.92489 -18.99557 -18.93124 -17.97408 -17.29534 -16.81518 -16.47644 -16.33794 -16.25177 -15.63846 -15.05789 -14.74207 -14.57917 -14.08230 -13.79318 -13.64732 -13.17736 -12.81334 -12.69688 -12.48568 -12.43840 -11.99297 -11.84172 -11.66593 -11.63950 -11.32700 -11.00664 -10.75530 -9.70573 -8.53995 -8.28447 -6.33823 0.05315 0.37856 1.07919 1.39427 1.41593 1.53217 2.26477 2.38292 2.59859 3.07529 3.24882 3.88631 3.92339 4.06659 4.21007 4.25319 4.40302 4.54709 4.78556 4.89028 4.91035 5.00942 5.05090 5.13254 5.41842 5.45205 5.56574 5.64725 5.74415 6.14431 6.28635 6.55806 6.75089 7.31192 8.88556 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.037255 B = 0.004002 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.403215 B = 6994.203549 C = 7719.856313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.537 4.537 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.106 4.106 11 C 0.130 3.870 12 N -0.737 5.737 13 C 0.244 3.756 14 C -0.204 4.204 15 C -0.025 4.025 16 C -0.205 4.205 17 C 0.137 3.863 18 F -0.138 7.138 19 C -0.181 4.181 20 Cl -0.068 7.068 21 H 0.266 0.734 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.401 0.599 29 H 0.151 0.849 30 H 0.174 0.826 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.455 -6.969 0.006 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.160 1.160 7 C -0.575 4.575 8 H 0.045 0.955 9 C -0.045 4.045 10 C -0.144 4.144 11 C 0.006 3.994 12 N -0.364 5.364 13 C 0.136 3.864 14 C -0.227 4.227 15 C -0.044 4.044 16 C -0.226 4.226 17 C 0.116 3.884 18 F -0.117 7.117 19 C -0.213 4.213 20 Cl -0.040 7.040 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.237 0.763 29 H 0.168 0.832 30 H 0.191 0.809 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 23.129 -6.824 0.009 24.115 hybrid contribution -1.046 -0.367 -0.019 1.109 sum 22.083 -7.191 -0.010 23.224 Atomic orbital electron populations 1.70087 1.08588 1.28236 1.52663 1.26110 0.95642 1.03909 0.93996 0.85585 0.79705 0.77620 0.79289 1.19078 1.21422 1.16045 1.21515 0.92415 0.92981 1.50582 0.95465 1.19433 0.93603 0.94142 0.97333 1.21482 0.93400 0.98332 1.01223 1.21506 0.93798 0.81778 1.02283 1.45092 1.02888 1.08762 1.79625 1.17579 0.85480 0.90998 0.92326 1.21063 0.93056 0.98378 1.10227 1.21246 0.94809 0.96629 0.91689 1.21181 1.00466 0.91224 1.09725 1.17415 0.90072 0.79774 1.01116 1.91490 1.89297 1.37213 1.93681 1.20487 0.89867 0.88622 1.22358 1.98341 1.61313 1.46691 1.97628 0.92542 0.95319 0.95442 0.92934 0.92935 0.90769 0.90694 0.76269 0.83153 0.80871 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.64 13.96 21.45 0.30 -59.34 16 2 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 3 Si 0.96 42.49 27.47 68.60 1.88 44.38 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 7 C -0.54 -30.26 9.66 25.60 0.25 -30.02 16 8 H 0.03 1.71 7.99 -2.91 -0.02 1.68 16 9 C -0.01 -0.31 4.04 29.84 0.12 -0.19 16 10 C -0.11 -3.76 5.27 30.59 0.16 -3.60 16 11 C 0.13 3.43 4.91 86.38 0.42 3.85 16 12 N -0.74 -18.94 5.69 -339.32 -1.93 -20.87 16 13 C 0.24 5.81 6.65 38.21 0.25 6.07 16 14 C -0.20 -3.82 9.31 22.40 0.21 -3.61 16 15 C -0.03 -0.36 10.04 22.25 0.22 -0.13 16 16 C -0.21 -3.36 10.02 22.34 0.22 -3.14 16 17 C 0.14 3.08 7.27 22.37 0.16 3.24 16 18 F -0.14 -3.33 16.84 44.97 0.76 -2.58 16 19 C -0.18 -4.49 6.34 22.48 0.14 -4.35 16 20 Cl -0.07 -1.75 27.25 -2.72 -0.07 -1.82 16 21 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 22 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 23 H 0.03 1.12 7.57 -2.39 -0.02 1.10 16 24 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 1.81 7.96 -2.39 -0.02 1.79 16 27 H 0.07 1.81 7.94 -2.39 -0.02 1.79 16 28 H 0.40 10.69 7.15 -92.71 -0.66 10.03 16 29 H 0.15 2.42 6.73 -2.91 -0.02 2.40 16 30 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -65.73 284.19 4.00 -61.73 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.43 Total: 9.92 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 2.63 Total: -31.41 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -1.63 Total: -80.21 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.76 Total: -2.58 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.38 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.07 Total: -1.82 kcal Total: -65.73 4.00 -61.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709705160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.678 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds