Wall clock time and date at job start Mon Mar 30 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31905 * 119.58608 * 2 1 4 4 C 1.32329 * 121.65409 * 180.02562 * 3 2 1 5 5 O 1.35584 * 119.68200 * 180.02562 * 4 3 2 6 6 C 1.34853 * 116.99833 * 359.97438 * 5 4 3 7 7 H 1.07997 * 119.99798 * 359.73277 * 6 5 4 8 8 C 1.38665 * 119.99855 * 179.97438 * 6 5 4 9 9 N 1.31536 * 119.99964 * 179.72706 * 8 6 5 10 10 Si 1.86803 * 119.99878 * 359.72750 * 8 6 5 11 11 H 1.48500 * 109.46986 * 90.00051 * 10 8 6 12 12 H 1.48496 * 109.47029 * 210.00068 * 10 8 6 13 13 H 1.48499 * 109.47352 * 329.99898 * 10 8 6 14 14 C 1.39021 * 120.63729 * 0.27023 * 4 3 2 15 15 C 1.38370 * 119.11535 * 359.43889 * 14 4 3 16 16 C 1.38211 * 119.58433 * 179.97438 * 2 1 3 17 17 Br 1.89099 * 120.35981 * 0.02562 * 16 2 1 18 18 H 1.08997 * 109.47625 * 89.99827 * 1 2 3 19 19 H 1.09001 * 109.47199 * 210.00009 * 1 2 3 20 20 H 1.09001 * 109.47074 * 329.99972 * 1 2 3 21 21 H 0.97000 * 120.00252 * 179.97438 * 9 8 6 22 22 H 1.08000 * 120.43960 * 179.71159 * 14 4 3 23 23 H 1.08000 * 120.75997 * 180.25784 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1471 0.0000 4 6 3.4807 1.1948 -0.0005 5 8 4.1091 2.3962 0.0000 6 6 3.3282 3.4956 0.0006 7 1 2.2530 3.3942 -0.0038 8 6 3.9057 4.7563 0.0017 9 7 3.1440 5.8286 -0.0033 10 14 5.7655 4.9316 0.0102 11 1 6.2648 4.9763 -1.3877 12 1 6.1412 6.1860 0.7104 13 1 6.3688 3.7718 0.7145 14 6 4.2318 0.0250 -0.0067 15 6 3.5784 -1.1947 -0.0005 16 6 2.1893 -1.2019 0.0005 17 35 1.2422 -2.8386 0.0005 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 3.5480 6.7105 -0.0021 22 1 5.3110 0.0677 -0.0118 23 1 4.1357 -2.1198 -0.0009 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709882149.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:27 Heat of formation + Delta-G solvation = 5.958967 kcal Electronic energy + Delta-G solvation = -11584.776614 eV Core-core repulsion = 9252.195098 eV Total energy + Delta-G solvation = -2332.581517 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.88193 -37.36339 -32.76709 -32.40959 -31.87854 -29.22463 -27.16101 -25.05468 -22.14551 -21.62441 -18.38964 -17.10071 -15.78201 -15.20040 -14.75607 -14.41296 -13.66343 -13.30818 -12.92298 -12.50116 -12.35525 -11.94336 -11.74916 -11.50441 -11.05642 -10.52113 -10.38980 -9.97653 -9.86349 -9.19054 -8.94361 -8.71209 -7.74546 -6.51104 -4.14923 1.63051 1.80979 2.09616 3.14423 3.17691 3.30174 4.12941 4.25352 4.36195 4.89616 5.00903 5.16822 5.56882 5.77295 5.93778 5.96565 6.01486 6.41230 6.43353 6.50581 6.97463 7.81526 7.95424 8.55684 8.89457 9.34891 10.55516 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.061570 B = 0.005871 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.660209 B = 4768.133360 C = 5207.639713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 N -0.528 5.528 4 C 0.337 3.663 5 O -0.191 6.191 6 C -0.372 4.372 7 H 0.124 0.876 8 C 0.062 3.938 9 N -0.865 5.865 10 Si 0.901 3.099 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.259 1.259 14 C -0.229 4.229 15 C -0.010 4.010 16 C -0.239 4.239 17 Br -0.070 7.070 18 H 0.080 0.920 19 H 0.078 0.922 20 H 0.079 0.921 21 H 0.282 0.718 22 H 0.135 0.865 23 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -15.222 0.018 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 N -0.256 5.256 4 C 0.157 3.843 5 O -0.086 6.086 6 C -0.448 4.448 7 H 0.141 0.859 8 C -0.143 4.143 9 N -0.501 5.501 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.204 1.204 13 H -0.183 1.183 14 C -0.252 4.252 15 C -0.035 4.035 16 C -0.322 4.322 17 Br 0.013 6.987 18 H 0.098 0.902 19 H 0.097 0.903 20 H 0.098 0.902 21 H 0.092 0.908 22 H 0.153 0.847 23 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.543 -14.613 0.022 14.833 hybrid contribution 1.440 -0.061 -0.031 1.442 sum -1.103 -14.674 -0.008 14.715 Atomic orbital electron populations 1.20876 0.89150 1.03659 1.03302 1.20774 0.96452 0.86154 0.89576 1.67392 1.09089 1.27598 1.21566 1.19808 0.87317 0.86497 0.90707 1.83745 1.35753 1.11847 1.77257 1.21006 0.93074 0.80552 1.50170 0.85851 1.24554 1.00228 0.93684 0.95784 1.69633 1.36168 0.98093 1.46252 0.86254 0.83556 0.78426 0.79152 1.19670 1.20414 1.18320 1.20781 1.00708 0.89914 1.13783 1.20962 0.91949 0.97510 0.93120 1.22013 0.95040 0.91010 1.24187 1.96467 1.75900 1.27940 1.98366 0.90175 0.90310 0.90169 0.90790 0.84733 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.71 36.00 0.35 -1.39 14 2 C 0.21 4.08 6.78 -82.57 -0.56 3.52 14 3 N -0.53 -12.18 8.56 -9.50 -0.08 -12.26 14 4 C 0.34 7.85 7.44 -17.05 -0.13 7.73 14 5 O -0.19 -4.99 8.57 0.49 0.00 -4.99 14 6 C -0.37 -10.58 10.10 30.89 0.31 -10.27 14 7 H 0.12 3.76 6.94 -52.49 -0.36 3.39 14 8 C 0.06 1.73 5.49 -17.52 -0.10 1.64 14 9 N -0.87 -24.78 13.96 55.48 0.77 -24.00 14 10 Si 0.90 20.98 28.62 -169.99 -4.86 16.12 14 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 14 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 14 13 H -0.26 -6.00 7.11 56.52 0.40 -5.59 14 14 C -0.23 -4.35 10.05 -39.24 -0.39 -4.75 14 15 C -0.01 -0.16 9.93 -39.28 -0.39 -0.55 14 16 C -0.24 -4.09 6.24 -39.34 -0.25 -4.34 14 17 Br -0.07 -0.96 31.80 -68.01 -2.16 -3.12 14 18 H 0.08 1.13 8.14 -51.93 -0.42 0.71 14 19 H 0.08 1.06 6.63 -51.93 -0.34 0.71 14 20 H 0.08 1.26 8.14 -51.93 -0.42 0.84 14 21 H 0.28 7.38 8.31 -40.82 -0.34 7.05 14 22 H 0.13 2.26 8.06 -52.49 -0.42 1.83 14 23 H 0.13 1.77 8.06 -52.49 -0.42 1.35 14 LS Contribution 232.85 15.07 3.51 3.51 Total: -1.00 -29.00 232.85 -5.51 -34.50 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -1.53 Total: -1.35 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.15 Total: -8.41 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.69 Total: -36.26 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: 0.00 Total: -4.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.86 Total: 16.12 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -2.16 Total: -3.12 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.00 -5.51 -34.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709882149.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.462 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds