Wall clock time and date at job start Mon Mar 30 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31905 * 119.58608 * 2 1 4 4 C 1.32329 * 121.65409 * 180.02562 * 3 2 1 5 5 O 1.35584 * 119.68200 * 180.02562 * 4 3 2 6 6 C 1.34853 * 116.99833 * 359.97438 * 5 4 3 7 7 H 1.07997 * 119.99798 * 359.73277 * 6 5 4 8 8 C 1.38665 * 119.99855 * 179.97438 * 6 5 4 9 9 N 1.31536 * 119.99964 * 179.72706 * 8 6 5 10 10 Si 1.86803 * 119.99878 * 359.72750 * 8 6 5 11 11 H 1.48500 * 109.46986 * 90.00051 * 10 8 6 12 12 H 1.48496 * 109.47029 * 210.00068 * 10 8 6 13 13 H 1.48499 * 109.47352 * 329.99898 * 10 8 6 14 14 C 1.39021 * 120.63729 * 0.27023 * 4 3 2 15 15 C 1.38370 * 119.11535 * 359.43889 * 14 4 3 16 16 C 1.38211 * 119.58433 * 179.97438 * 2 1 3 17 17 Br 1.89099 * 120.35981 * 0.02562 * 16 2 1 18 18 H 1.08997 * 109.47625 * 89.99827 * 1 2 3 19 19 H 1.09001 * 109.47199 * 210.00009 * 1 2 3 20 20 H 1.09001 * 109.47074 * 329.99972 * 1 2 3 21 21 H 0.97000 * 120.00252 * 179.97438 * 9 8 6 22 22 H 1.08000 * 120.43960 * 179.71159 * 14 4 3 23 23 H 1.08000 * 120.75997 * 180.25784 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1471 0.0000 4 6 3.4807 1.1948 -0.0005 5 8 4.1091 2.3962 0.0000 6 6 3.3282 3.4956 0.0006 7 1 2.2530 3.3942 -0.0038 8 6 3.9057 4.7563 0.0017 9 7 3.1440 5.8286 -0.0033 10 14 5.7655 4.9316 0.0102 11 1 6.2648 4.9763 -1.3877 12 1 6.1412 6.1860 0.7104 13 1 6.3688 3.7718 0.7145 14 6 4.2318 0.0250 -0.0067 15 6 3.5784 -1.1947 -0.0005 16 6 2.1893 -1.2019 0.0005 17 35 1.2422 -2.8386 0.0005 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 3.5480 6.7105 -0.0021 22 1 5.3110 0.0677 -0.0118 23 1 4.1357 -2.1198 -0.0009 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709882149.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:27 Heat of formation + Delta-G solvation = -14.009165 kcal Electronic energy + Delta-G solvation = -11585.642498 eV Core-core repulsion = 9252.195098 eV Total energy + Delta-G solvation = -2333.447400 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.53129 -39.08911 -34.63381 -33.95915 -33.46651 -30.64594 -28.76254 -26.86964 -23.75126 -23.20100 -20.26800 -18.92248 -17.42488 -16.68788 -16.46707 -16.20919 -15.19736 -14.84014 -14.69099 -14.31080 -13.92069 -13.32625 -13.19292 -12.93411 -12.74681 -12.30842 -11.89454 -11.88377 -11.18275 -10.89359 -10.66292 -10.31790 -9.32848 -8.51784 -6.26298 0.07095 0.31385 0.67799 1.31039 1.35839 1.50533 2.25476 2.60167 2.70437 3.01877 3.38044 3.79091 4.09691 4.25883 4.59755 4.62337 4.69522 4.89393 5.01814 5.11813 5.43110 5.81910 5.93864 6.71983 7.09324 7.40599 8.59876 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.061570 B = 0.005871 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.660209 B = 4768.133360 C = 5207.639713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.187 3.813 3 N -0.567 5.567 4 C 0.312 3.688 5 O -0.219 6.219 6 C -0.389 4.389 7 H 0.083 0.917 8 C 0.009 3.991 9 N -0.917 5.917 10 Si 0.973 3.027 11 H -0.263 1.263 12 H -0.266 1.266 13 H -0.257 1.257 14 C -0.224 4.224 15 C 0.003 3.997 16 C -0.224 4.224 17 Br -0.022 7.022 18 H 0.094 0.906 19 H 0.103 0.897 20 H 0.069 0.931 21 H 0.286 0.714 22 H 0.160 0.840 23 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -18.521 -0.016 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.047 3.953 3 N -0.295 5.295 4 C 0.133 3.867 5 O -0.118 6.118 6 C -0.466 4.466 7 H 0.101 0.899 8 C -0.191 4.191 9 N -0.557 5.557 10 Si 0.794 3.206 11 H -0.188 1.188 12 H -0.190 1.190 13 H -0.181 1.181 14 C -0.246 4.246 15 C -0.023 4.023 16 C -0.307 4.307 17 Br 0.061 6.939 18 H 0.112 0.888 19 H 0.121 0.879 20 H 0.088 0.912 21 H 0.096 0.904 22 H 0.178 0.822 23 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.652 -17.992 -0.012 18.068 hybrid contribution 0.912 0.430 -0.023 1.009 sum -0.740 -17.562 -0.035 17.578 Atomic orbital electron populations 1.20966 0.86972 1.04337 1.04399 1.21390 0.98076 0.86027 0.89829 1.67346 1.09804 1.30258 1.22103 1.20494 0.88165 0.86996 0.91074 1.83704 1.35330 1.11948 1.80788 1.20639 0.91735 0.82183 1.52020 0.89924 1.25395 1.05282 0.92985 0.95389 1.69730 1.38191 0.98677 1.49126 0.85203 0.77268 0.78645 0.79501 1.18826 1.19031 1.18124 1.21163 1.02001 0.89110 1.12312 1.21526 0.91886 0.98272 0.90628 1.22443 0.95970 0.92477 1.19778 1.96540 1.75061 1.24160 1.98107 0.88778 0.87887 0.91198 0.90389 0.82228 0.80209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.24 9.71 71.24 0.69 -2.54 14 2 C 0.19 6.95 6.78 42.54 0.29 7.23 14 3 N -0.57 -26.71 8.56 -296.85 -2.54 -29.25 14 4 C 0.31 14.68 7.44 84.81 0.63 15.31 14 5 O -0.22 -11.83 8.57 -21.15 -0.18 -12.01 14 6 C -0.39 -23.43 10.10 67.92 0.69 -22.74 14 7 H 0.08 5.46 6.94 -2.91 -0.02 5.44 14 8 C 0.01 0.50 5.49 84.84 0.47 0.97 14 9 N -0.92 -55.30 13.96 21.61 0.30 -55.00 14 10 Si 0.97 44.42 28.62 68.60 1.96 46.38 14 11 H -0.26 -11.51 7.11 99.48 0.71 -10.81 14 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 14 13 H -0.26 -11.48 7.11 99.48 0.71 -10.77 14 14 C -0.22 -7.99 10.05 22.49 0.23 -7.77 14 15 C 0.00 0.08 9.93 22.46 0.22 0.30 14 16 C -0.22 -6.91 6.24 22.43 0.14 -6.77 14 17 Br -0.02 -0.51 31.80 -20.37 -0.65 -1.16 14 18 H 0.09 2.51 8.14 -2.39 -0.02 2.49 14 19 H 0.10 2.47 6.63 -2.39 -0.02 2.46 14 20 H 0.07 2.21 8.14 -2.39 -0.02 2.19 14 21 H 0.29 15.70 8.31 -92.71 -0.77 14.93 14 22 H 0.16 4.85 8.06 -2.91 -0.02 4.83 14 23 H 0.18 3.62 8.06 -2.91 -0.02 3.60 14 Total: -1.00 -66.83 232.85 3.47 -63.35 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.23 Total: 3.70 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 3.35 Total: -16.00 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -2.24 Total: -84.25 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.18 Total: -12.01 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.96 Total: 46.38 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.65 Total: -1.16 kcal Total: -66.83 3.47 -63.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709882149.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.341 kcal (2) G-P(sol) polarization free energy of solvation -66.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds