Wall clock time and date at job start Mon Mar 30 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38184 * 119.60992 * 2 1 4 4 C 1.38671 * 119.19221 * 179.77787 * 3 2 1 5 5 C 1.38610 * 118.43317 * 0.48905 * 4 3 2 6 6 C 1.50703 * 120.41971 * 179.72923 * 5 4 3 7 7 S 1.81401 * 109.47341 * 270.02333 * 6 5 4 8 8 C 1.81397 * 103.00016 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46975 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00037 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00064 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99741 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00015 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47044 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47028 * 119.99988 * 13 11 9 16 16 H 1.48497 * 109.46962 * 239.99965 * 13 11 9 17 17 C 1.38349 * 119.15480 * 359.75608 * 5 4 3 18 18 Cl 1.73594 * 119.63676 * 179.97438 * 17 5 4 19 19 N 1.31873 * 119.60639 * 180.27792 * 2 1 3 20 20 H 1.09001 * 109.46953 * 269.72059 * 1 2 3 21 21 H 1.09000 * 109.47318 * 29.71657 * 1 2 3 22 22 H 1.09000 * 109.47161 * 149.72288 * 1 2 3 23 23 H 1.08004 * 120.40444 * 0.02562 * 3 2 1 24 24 H 1.07996 * 120.78111 * 180.22649 * 4 3 2 25 25 H 1.08996 * 109.47526 * 30.02869 * 6 5 4 26 26 H 1.09004 * 109.46580 * 150.02757 * 6 5 4 27 27 H 1.09000 * 109.47180 * 300.00361 * 8 7 6 28 28 H 1.09002 * 109.46787 * 60.00042 * 8 7 6 29 29 H 0.96997 * 120.00243 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1898 1.2014 0.0000 4 6 3.5765 1.1913 0.0047 5 6 4.2276 -0.0324 -0.0012 6 6 5.7333 -0.0955 -0.0026 7 16 6.3362 -0.1127 -1.7133 8 6 8.1372 -0.1900 -1.5105 9 6 8.7949 -0.2106 -2.8662 10 1 8.1900 -0.1798 -3.7604 11 6 10.1690 -0.2688 -2.9651 12 7 10.9055 -0.3058 -1.8762 13 14 10.9843 -0.2935 -4.6456 14 1 9.9420 -0.2432 -5.7022 15 1 11.8813 0.8826 -4.7779 16 1 11.7776 -1.5402 -4.7924 17 6 3.4775 -1.1949 -0.0063 18 17 4.2800 -2.7342 -0.0143 19 7 2.1586 -1.1465 -0.0056 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8925 -0.5094 22 1 -0.3633 -0.8875 -0.5181 23 1 1.6500 2.1369 0.0004 24 1 4.1359 2.1150 0.0085 25 1 6.1340 0.7758 0.5152 26 1 6.0593 -1.0025 0.5067 27 1 8.4781 0.6836 -0.9548 28 1 8.4026 -1.0948 -0.9637 29 1 11.8721 -0.3471 -1.9456 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840211416.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:32 Heat of formation + Delta-G solvation = 8.185514 kcal Electronic energy + Delta-G solvation = -13871.023942 eV Core-core repulsion = 11331.552627 eV Total energy + Delta-G solvation = -2539.471315 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.40082 -36.55045 -34.20463 -33.15779 -32.25064 -29.68484 -28.53809 -25.64908 -23.58803 -23.04754 -21.67030 -17.13718 -16.72374 -16.37019 -15.57323 -15.29841 -14.82166 -14.38753 -13.81335 -13.38612 -13.14619 -13.08510 -12.53887 -12.49683 -12.37308 -12.05709 -11.80160 -11.41579 -10.97592 -10.88373 -10.75445 -10.30205 -9.73614 -9.70086 -9.51527 -8.93426 -8.63148 -8.56788 -6.71668 -6.20720 -4.24762 0.79468 1.08754 1.93092 2.63339 3.24412 3.31694 3.38003 3.63556 3.80088 4.22639 4.34844 4.59080 4.74334 4.78365 5.11501 5.16600 5.18795 5.37882 5.39078 5.54528 5.76358 5.91977 5.94080 6.10052 6.43491 7.07271 7.09880 7.68149 7.74067 7.99482 8.77260 9.38324 10.90549 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.037770 B = 0.004586 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.144091 B = 6104.409175 C = 6393.458869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.135 3.865 3 C -0.169 4.169 4 C -0.048 4.048 5 C -0.094 4.094 6 C -0.058 4.058 7 S -0.287 6.287 8 C 0.089 3.911 9 C -0.511 4.511 10 H 0.068 0.932 11 C 0.065 3.935 12 N -0.892 5.892 13 Si 0.906 3.094 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.281 1.281 17 C 0.189 3.811 18 Cl -0.019 7.019 19 N -0.480 5.480 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.141 0.859 24 H 0.147 0.853 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.024 2.325 6.370 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.004 4.004 3 C -0.189 4.189 4 C -0.076 4.076 5 C -0.098 4.098 6 C -0.206 4.206 7 S -0.058 6.058 8 C -0.057 4.057 9 C -0.550 4.550 10 H 0.086 0.914 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.733 3.267 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.207 1.207 17 C 0.024 3.976 18 Cl 0.010 6.990 19 N -0.191 5.191 20 H 0.097 0.903 21 H 0.096 0.904 22 H 0.097 0.903 23 H 0.159 0.841 24 H 0.165 0.835 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.786 1.421 5.492 18.669 hybrid contribution 1.905 0.537 0.325 2.006 sum -15.881 1.958 5.817 17.026 Atomic orbital electron populations 1.20711 0.88286 1.03688 1.03153 1.21144 0.96889 0.87312 0.95061 1.21983 0.94630 0.99366 1.02939 1.21511 0.94209 0.97565 0.94277 1.20076 0.95901 0.92426 1.01364 1.22205 0.91925 1.05859 1.00638 1.86861 1.14135 1.97867 1.06942 1.21089 0.83185 1.00142 1.01310 1.20699 0.91188 1.52043 0.91069 0.91432 1.24964 0.96798 0.94672 0.97453 1.69958 1.05722 1.49658 1.27730 0.86298 0.79308 0.77743 0.83333 1.19413 1.20730 1.20715 1.21477 0.89379 0.87700 0.99093 1.98418 1.76667 1.27784 1.96145 1.66844 1.08001 1.30373 1.13914 0.90307 0.90428 0.90315 0.84101 0.83540 0.89333 0.89014 0.94563 0.94476 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.17 36.01 0.37 -0.45 15 2 C 0.13 1.61 6.78 -82.59 -0.56 1.05 15 3 C -0.17 -1.83 9.74 -39.44 -0.38 -2.21 15 4 C -0.05 -0.61 9.86 -39.28 -0.39 -1.00 15 5 C -0.09 -1.44 5.16 -104.44 -0.54 -1.98 15 6 C -0.06 -1.00 5.69 36.01 0.20 -0.79 15 7 S -0.29 -6.22 21.64 -107.50 -2.33 -8.55 15 8 C 0.09 2.31 5.70 36.00 0.21 2.51 15 9 C -0.51 -14.38 9.13 -34.44 -0.31 -14.70 15 10 H 0.07 1.92 7.71 -52.48 -0.40 1.51 15 11 C 0.06 1.82 5.46 -17.82 -0.10 1.72 15 12 N -0.89 -25.87 13.29 55.43 0.74 -25.13 15 13 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 15 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 17 C 0.19 3.03 7.27 -17.44 -0.13 2.90 15 18 Cl -0.02 -0.30 27.46 -51.86 -1.42 -1.73 15 19 N -0.48 -7.20 10.25 -6.62 -0.07 -7.27 15 20 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.08 0.46 8.07 -51.93 -0.42 0.04 15 22 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.14 1.03 8.06 -52.48 -0.42 0.61 15 24 H 0.15 1.57 8.06 -52.49 -0.42 1.14 15 25 H 0.09 1.38 8.10 -51.93 -0.42 0.96 15 26 H 0.09 1.57 6.92 -51.92 -0.36 1.21 15 27 H 0.04 0.96 8.14 -51.92 -0.42 0.54 15 28 H 0.04 1.00 8.14 -51.92 -0.42 0.58 15 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 LS Contribution 286.25 15.07 4.31 4.31 Total: -1.00 -30.61 286.25 -8.70 -39.31 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -3.27 Total: -4.40 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.63 Total: -12.93 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.67 Total: -32.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -6.22 SS G_CDS: -2.33 Total: -8.55 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.42 Total: -1.73 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.61 -8.70 -39.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840211416.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.493 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds