Wall clock time and date at job start Mon Mar 30 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38184 * 119.60992 * 2 1 4 4 C 1.38671 * 119.19221 * 179.77787 * 3 2 1 5 5 C 1.38610 * 118.43317 * 0.48905 * 4 3 2 6 6 C 1.50703 * 120.41971 * 179.72923 * 5 4 3 7 7 S 1.81401 * 109.47341 * 270.02333 * 6 5 4 8 8 C 1.81397 * 103.00016 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46975 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00037 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00064 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99741 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00015 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47044 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47028 * 119.99988 * 13 11 9 16 16 H 1.48497 * 109.46962 * 239.99965 * 13 11 9 17 17 C 1.38349 * 119.15480 * 359.75608 * 5 4 3 18 18 Cl 1.73594 * 119.63676 * 179.97438 * 17 5 4 19 19 N 1.31873 * 119.60639 * 180.27792 * 2 1 3 20 20 H 1.09001 * 109.46953 * 269.72059 * 1 2 3 21 21 H 1.09000 * 109.47318 * 29.71657 * 1 2 3 22 22 H 1.09000 * 109.47161 * 149.72288 * 1 2 3 23 23 H 1.08004 * 120.40444 * 0.02562 * 3 2 1 24 24 H 1.07996 * 120.78111 * 180.22649 * 4 3 2 25 25 H 1.08996 * 109.47526 * 30.02869 * 6 5 4 26 26 H 1.09004 * 109.46580 * 150.02757 * 6 5 4 27 27 H 1.09000 * 109.47180 * 300.00361 * 8 7 6 28 28 H 1.09002 * 109.46787 * 60.00042 * 8 7 6 29 29 H 0.96997 * 120.00243 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1898 1.2014 0.0000 4 6 3.5765 1.1913 0.0047 5 6 4.2276 -0.0324 -0.0012 6 6 5.7333 -0.0955 -0.0026 7 16 6.3362 -0.1127 -1.7133 8 6 8.1372 -0.1900 -1.5105 9 6 8.7949 -0.2106 -2.8662 10 1 8.1900 -0.1798 -3.7604 11 6 10.1690 -0.2688 -2.9651 12 7 10.9055 -0.3058 -1.8762 13 14 10.9843 -0.2935 -4.6456 14 1 9.9420 -0.2432 -5.7022 15 1 11.8813 0.8826 -4.7779 16 1 11.7776 -1.5402 -4.7924 17 6 3.4775 -1.1949 -0.0063 18 17 4.2800 -2.7342 -0.0143 19 7 2.1586 -1.1465 -0.0056 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8925 -0.5094 22 1 -0.3633 -0.8875 -0.5181 23 1 1.6500 2.1369 0.0004 24 1 4.1359 2.1150 0.0085 25 1 6.1340 0.7758 0.5152 26 1 6.0593 -1.0025 0.5067 27 1 8.4781 0.6836 -0.9548 28 1 8.4026 -1.0948 -0.9637 29 1 11.8721 -0.3471 -1.9456 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840211416.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:31 Heat of formation + Delta-G solvation = -9.285199 kcal Electronic energy + Delta-G solvation = -13871.781529 eV Core-core repulsion = 11331.552627 eV Total energy + Delta-G solvation = -2540.228902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.42138 -37.71959 -35.32431 -35.25275 -33.21720 -30.80379 -30.52565 -26.76444 -25.14754 -24.52846 -22.72921 -18.71018 -18.18931 -17.60744 -17.16491 -16.53819 -16.31161 -15.71074 -14.91097 -14.78866 -14.63486 -14.41773 -14.04124 -13.81405 -13.72680 -13.18311 -12.90228 -12.76041 -12.59272 -12.46422 -12.16562 -12.15370 -11.60689 -10.91841 -10.76037 -10.71645 -10.62747 -9.69734 -8.48375 -8.34030 -6.46936 -0.29764 0.07732 0.79436 1.12045 1.39054 1.39905 1.54406 1.97774 2.36013 2.60214 3.00526 3.22067 3.58482 3.67382 3.82612 4.08116 4.30266 4.41353 4.57673 4.74441 4.82685 4.94467 4.95010 5.02059 5.07393 5.16630 5.55649 5.56597 5.88010 6.60301 6.67507 7.20917 8.77968 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.037770 B = 0.004586 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.144091 B = 6104.409175 C = 6393.458869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.131 3.869 3 C -0.155 4.155 4 C -0.048 4.048 5 C -0.117 4.117 6 C -0.042 4.042 7 S -0.295 6.295 8 C 0.092 3.908 9 C -0.534 4.534 10 H 0.060 0.940 11 C 0.015 3.985 12 N -0.924 5.924 13 Si 0.976 3.024 14 H -0.266 1.266 15 H -0.271 1.271 16 H -0.274 1.274 17 C 0.172 3.828 18 Cl -0.038 7.038 19 N -0.504 5.504 20 H 0.096 0.904 21 H 0.107 0.893 22 H 0.071 0.929 23 H 0.186 0.814 24 H 0.168 0.832 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.019 0.981 28 H 0.013 0.987 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.857 3.894 6.008 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.007 4.007 3 C -0.174 4.174 4 C -0.075 4.075 5 C -0.121 4.121 6 C -0.189 4.189 7 S -0.066 6.066 8 C -0.055 4.055 9 C -0.573 4.573 10 H 0.078 0.922 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.799 3.201 14 H -0.190 1.190 15 H -0.196 1.196 16 H -0.199 1.199 17 C 0.007 3.993 18 Cl -0.009 7.009 19 N -0.216 5.216 20 H 0.114 0.886 21 H 0.126 0.874 22 H 0.090 0.910 23 H 0.203 0.797 24 H 0.185 0.815 25 H 0.122 0.878 26 H 0.104 0.896 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.622 2.989 5.131 20.501 hybrid contribution 2.261 0.102 0.538 2.327 sum -17.361 3.091 5.669 18.523 Atomic orbital electron populations 1.20867 0.85336 1.04873 1.04571 1.21971 0.98819 0.86927 0.93015 1.22458 0.93852 1.00735 1.00370 1.21870 0.95413 0.97120 0.93094 1.19993 0.94459 0.93596 1.04098 1.22165 0.93535 1.06354 0.96889 1.86649 1.10417 1.97850 1.11711 1.20757 0.86724 0.98063 0.99946 1.20992 0.91971 1.52641 0.91683 0.92153 1.25898 0.97365 0.93855 1.01504 1.70056 1.06240 1.50041 1.29942 0.85236 0.78237 0.78233 0.78384 1.19045 1.19583 1.19913 1.21542 0.90092 0.87225 1.00430 1.98402 1.77127 1.29041 1.96332 1.66880 1.07513 1.32199 1.15055 0.88574 0.87444 0.90970 0.79669 0.81476 0.87795 0.89588 0.96225 0.96879 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.17 71.24 0.72 -0.50 15 2 C 0.13 2.76 6.78 42.54 0.29 3.04 15 3 C -0.15 -2.72 9.74 22.36 0.22 -2.50 15 4 C -0.05 -1.08 9.86 22.46 0.22 -0.85 15 5 C -0.12 -3.49 5.16 -19.75 -0.10 -3.59 15 6 C -0.04 -1.42 5.69 71.24 0.41 -1.01 15 7 S -0.30 -13.02 21.64 -56.49 -1.22 -14.24 15 8 C 0.09 4.95 5.70 71.24 0.41 5.35 15 9 C -0.53 -30.79 9.13 25.60 0.23 -30.55 15 10 H 0.06 3.49 7.71 -2.91 -0.02 3.47 15 11 C 0.01 0.83 5.46 84.66 0.46 1.29 15 12 N -0.92 -54.44 13.29 21.45 0.28 -54.16 15 13 Si 0.98 44.01 29.54 68.60 2.03 46.04 15 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 17 C 0.17 5.45 7.27 84.70 0.62 6.06 15 18 Cl -0.04 -1.24 27.46 -2.72 -0.07 -1.31 15 19 N -0.50 -14.52 10.25 -174.85 -1.79 -16.31 15 20 H 0.10 0.91 8.14 -2.39 -0.02 0.89 15 21 H 0.11 0.71 8.07 -2.39 -0.02 0.69 15 22 H 0.07 1.02 8.14 -2.39 -0.02 1.00 15 23 H 0.19 1.59 8.06 -2.91 -0.02 1.57 15 24 H 0.17 3.01 8.06 -2.91 -0.02 2.99 15 25 H 0.10 3.18 8.10 -2.39 -0.02 3.16 15 26 H 0.09 3.02 6.92 -2.39 -0.02 3.00 15 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 15 28 H 0.01 0.74 8.14 -2.39 -0.02 0.72 15 29 H 0.27 14.80 8.31 -92.71 -0.77 14.03 15 Total: -1.00 -67.78 286.25 3.84 -63.94 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: 1.15 Total: -0.70 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 3.47 Total: -23.26 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -1.51 Total: -70.47 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -13.02 SS G_CDS: -1.22 Total: -14.24 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.07 Total: -1.31 kcal Total: -67.78 3.84 -63.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840211416.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.652 kcal (2) G-P(sol) polarization free energy of solvation -67.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds