Wall clock time and date at job start Mon Mar 30 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 O 1.42896 * 109.46977 * 299.99762 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38237 * 120.00727 * 94.99607 * 12 9 7 14 14 C 1.38217 * 120.01892 * 179.97438 * 13 12 9 15 15 N 1.48011 * 119.99043 * 180.02562 * 14 13 12 16 16 O 1.21801 * 120.00094 * 359.97438 * 15 14 13 17 17 O 1.21805 * 119.99951 * 180.02562 * 15 14 13 18 18 C 1.38261 * 120.02171 * 359.97438 * 14 13 12 19 19 C 1.38195 * 120.01654 * 0.02770 * 18 14 13 20 20 C 1.38329 * 120.00632 * 274.72586 * 12 9 7 21 21 Cl 1.73599 * 120.01469 * 359.97438 * 20 12 9 22 22 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 23 23 H 0.96699 * 114.00348 * 300.00156 * 11 9 7 24 24 H 1.08010 * 119.98900 * 0.02562 * 13 12 9 25 25 H 1.08007 * 119.99516 * 179.97438 * 18 14 13 26 26 H 1.07995 * 120.01074 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 8 0.4292 -2.5746 1.1670 12 6 2.2304 -3.6445 0.0005 13 6 2.6005 -4.2377 1.1931 14 6 3.4983 -5.2886 1.1933 15 7 3.8936 -5.9237 2.4705 16 8 3.4281 -5.5199 3.5211 17 8 4.6851 -6.8495 2.4709 18 6 4.0264 -5.7475 0.0008 19 6 3.6573 -5.1554 -1.1921 20 6 2.7550 -4.1062 -1.1933 21 17 2.2849 -3.3668 -2.6920 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9209 -2.5290 1.9984 24 1 2.1872 -3.8804 2.1248 25 1 4.7282 -6.5685 0.0015 26 1 4.0696 -5.5142 -2.1235 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536170011.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:12 Heat of formation + Delta-G solvation = -44.626844 kcal Electronic energy + Delta-G solvation = -16674.254963 eV Core-core repulsion = 13553.907567 eV Total energy + Delta-G solvation = -3120.347396 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.06171 -39.60911 -36.50318 -36.41213 -36.22006 -32.44417 -31.75270 -31.33439 -26.88743 -26.23502 -23.67774 -22.41484 -21.35053 -18.97184 -18.54473 -17.61083 -17.40637 -16.95897 -15.81516 -15.54015 -14.44754 -13.90114 -13.86014 -13.30726 -13.12486 -12.67575 -12.25956 -11.86606 -11.65303 -11.48026 -11.12285 -11.03880 -10.93242 -10.89651 -10.40112 -10.24232 -9.92302 -9.27756 -9.10684 -8.65853 -8.30366 -6.57002 -4.44785 -0.09215 1.02887 1.42864 1.49041 2.14863 3.29150 3.32477 3.34907 3.52210 4.35033 4.42773 4.52440 4.80290 4.91918 5.14426 5.28084 5.58406 5.61604 5.72057 5.79250 6.05129 6.25782 6.53769 7.00861 7.58261 7.76521 8.08646 8.61099 8.68028 9.39365 10.82400 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.007663 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.474903 B = 3652.838316 C = 4378.166418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.043 3.957 3 Si 1.066 2.934 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.641 4.641 8 H 0.052 0.948 9 C 0.242 3.758 10 H 0.081 0.919 11 O -0.573 6.573 12 C -0.056 4.056 13 C -0.044 4.044 14 C -0.043 4.043 15 N 0.033 4.967 16 O -0.160 6.160 17 O -0.171 6.171 18 C -0.069 4.069 19 C -0.113 4.113 20 C 0.011 3.989 21 Cl -0.032 7.032 22 H 0.285 0.715 23 H 0.357 0.643 24 H 0.158 0.842 25 H 0.155 0.845 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -8.769 -2.849 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.167 4.167 3 Si 0.893 3.107 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.678 4.678 8 H 0.071 0.929 9 C 0.185 3.815 10 H 0.098 0.902 11 O -0.379 6.379 12 C -0.058 4.058 13 C -0.064 4.064 14 C -0.126 4.126 15 N 0.552 4.448 16 O -0.376 6.376 17 O -0.385 6.385 18 C -0.088 4.088 19 C -0.132 4.132 20 C -0.016 4.016 21 Cl -0.002 7.002 22 H 0.097 0.903 23 H 0.204 0.796 24 H 0.175 0.825 25 H 0.172 0.828 26 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.438 -6.826 -4.058 9.625 hybrid contribution 0.921 -1.788 0.542 2.083 sum 6.360 -8.615 -3.516 11.270 Atomic orbital electron populations 1.70660 1.06891 1.32353 1.41596 1.25801 0.96351 1.02331 0.92265 0.83590 0.75044 0.75220 0.76797 1.20484 1.21181 1.21221 1.22139 0.94304 0.90732 1.60649 0.92924 1.18902 0.87081 0.88543 0.86950 0.90158 1.86588 1.38955 1.96193 1.16137 1.21276 0.98062 0.96964 0.89546 1.20771 0.93320 0.91767 1.00509 1.21128 1.06328 1.01488 0.83698 1.43606 0.98734 0.99567 1.02908 1.94546 1.56582 1.66481 1.20022 1.94493 1.29578 1.20451 1.93974 1.20768 0.98822 0.99864 0.89334 1.21001 0.97968 0.95836 0.98435 1.21186 0.96914 0.94555 0.88989 1.98404 1.90463 1.81562 1.29807 0.90322 0.79555 0.82501 0.82767 0.83109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.00 13.53 55.43 0.75 -24.25 15 2 C 0.04 1.13 5.40 -17.82 -0.10 1.03 15 3 Si 1.07 23.55 29.90 -169.99 -5.08 18.47 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 15 6 H -0.29 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.64 -16.13 8.75 -34.44 -0.30 -16.43 15 8 H 0.05 1.34 7.74 -52.49 -0.41 0.93 15 9 C 0.24 5.49 2.19 -29.03 -0.06 5.43 15 10 H 0.08 1.95 6.98 -51.93 -0.36 1.58 15 11 O -0.57 -13.09 11.67 -35.23 -0.41 -13.50 15 12 C -0.06 -1.07 5.01 -104.59 -0.52 -1.59 15 13 C -0.04 -0.77 8.81 -39.59 -0.35 -1.12 15 14 C -0.04 -0.69 6.85 -79.95 -0.55 -1.24 15 15 N 0.03 0.56 4.45 33.96 0.15 0.71 15 16 O -0.16 -2.81 18.45 -29.46 -0.54 -3.36 15 17 O -0.17 -2.80 18.45 -29.46 -0.54 -3.35 15 18 C -0.07 -0.92 9.55 -39.59 -0.38 -1.30 15 19 C -0.11 -1.49 9.83 -39.54 -0.39 -1.88 15 20 C 0.01 0.18 6.31 -39.50 -0.25 -0.07 15 21 Cl -0.03 -0.53 27.39 -51.86 -1.42 -1.95 15 22 H 0.28 8.17 6.47 -40.82 -0.26 7.91 15 23 H 0.36 7.21 7.32 45.56 0.33 7.55 15 24 H 0.16 2.65 5.96 -52.48 -0.31 2.33 15 25 H 0.15 1.66 7.61 -52.48 -0.40 1.26 15 26 H 0.15 1.48 8.06 -52.49 -0.42 1.06 15 LS Contribution 258.00 15.07 3.89 3.89 Total: -1.00 -28.32 258.00 -6.74 -35.06 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -0.63 Total: 5.44 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.90 Total: -17.17 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.90 Total: -23.53 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -1.50 Total: -20.20 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.08 Total: 18.47 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.42 Total: -1.95 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.32 -6.74 -35.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536170011.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.570 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds