Wall clock time and date at job start Mon Mar 30 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 O 1.42896 * 109.46977 * 299.99762 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38237 * 120.00727 * 94.99607 * 12 9 7 14 14 C 1.38217 * 120.01892 * 179.97438 * 13 12 9 15 15 N 1.48011 * 119.99043 * 180.02562 * 14 13 12 16 16 O 1.21801 * 120.00094 * 359.97438 * 15 14 13 17 17 O 1.21805 * 119.99951 * 180.02562 * 15 14 13 18 18 C 1.38261 * 120.02171 * 359.97438 * 14 13 12 19 19 C 1.38195 * 120.01654 * 0.02770 * 18 14 13 20 20 C 1.38329 * 120.00632 * 274.72586 * 12 9 7 21 21 Cl 1.73599 * 120.01469 * 359.97438 * 20 12 9 22 22 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 23 23 H 0.96699 * 114.00348 * 300.00156 * 11 9 7 24 24 H 1.08010 * 119.98900 * 0.02562 * 13 12 9 25 25 H 1.08007 * 119.99516 * 179.97438 * 18 14 13 26 26 H 1.07995 * 120.01074 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 8 0.4292 -2.5746 1.1670 12 6 2.2304 -3.6445 0.0005 13 6 2.6005 -4.2377 1.1931 14 6 3.4983 -5.2886 1.1933 15 7 3.8936 -5.9237 2.4705 16 8 3.4281 -5.5199 3.5211 17 8 4.6851 -6.8495 2.4709 18 6 4.0264 -5.7475 0.0008 19 6 3.6573 -5.1554 -1.1921 20 6 2.7550 -4.1062 -1.1933 21 17 2.2849 -3.3668 -2.6920 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9209 -2.5290 1.9984 24 1 2.1872 -3.8804 2.1248 25 1 4.7282 -6.5685 0.0015 26 1 4.0696 -5.5142 -2.1235 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536170011.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:12 Heat of formation + Delta-G solvation = -61.901334 kcal Electronic energy + Delta-G solvation = -16675.004041 eV Core-core repulsion = 13553.907567 eV Total energy + Delta-G solvation = -3121.096474 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.36169 -40.94198 -38.02663 -37.73251 -37.68643 -34.41468 -33.12823 -32.63111 -28.60704 -27.56500 -25.40958 -23.69948 -22.82681 -20.32254 -19.85689 -19.52002 -18.71840 -18.27818 -17.17142 -17.14499 -15.84165 -15.53018 -15.34818 -14.88067 -14.69581 -14.13672 -13.93271 -13.22896 -12.93301 -12.80499 -12.64943 -12.55081 -12.36399 -12.33416 -12.13313 -11.97886 -11.56529 -10.77721 -10.58380 -10.44588 -9.99506 -8.64073 -6.51518 -1.38137 -0.19168 0.12617 0.21246 0.86886 1.53408 1.58532 1.78124 2.04503 2.53474 3.10404 3.21238 3.32629 3.56151 3.69345 3.90584 4.09823 4.32918 4.50006 4.51712 4.72848 4.94422 5.25870 5.27947 5.66576 6.05379 6.44246 6.50771 6.93315 7.40240 8.73387 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.007663 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.474903 B = 3652.838316 C = 4378.166418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 1.107 2.893 4 H -0.286 1.286 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.636 4.636 8 H 0.048 0.952 9 C 0.245 3.755 10 H 0.058 0.942 11 O -0.586 6.586 12 C -0.084 4.084 13 C -0.052 4.052 14 C -0.051 4.051 15 N 0.034 4.966 16 O -0.202 6.202 17 O -0.140 6.140 18 C -0.044 4.044 19 C -0.093 4.093 20 C 0.005 3.995 21 Cl -0.037 7.037 22 H 0.270 0.730 23 H 0.366 0.634 24 H 0.150 0.850 25 H 0.194 0.806 26 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.710 -10.207 -3.738 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.208 4.208 3 Si 0.929 3.071 4 H -0.211 1.211 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.674 4.674 8 H 0.066 0.934 9 C 0.187 3.813 10 H 0.076 0.924 11 O -0.393 6.393 12 C -0.086 4.086 13 C -0.071 4.071 14 C -0.135 4.135 15 N 0.551 4.449 16 O -0.408 6.408 17 O -0.364 6.364 18 C -0.063 4.063 19 C -0.112 4.112 20 C -0.023 4.023 21 Cl -0.007 7.007 22 H 0.081 0.919 23 H 0.214 0.786 24 H 0.168 0.832 25 H 0.211 0.789 26 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 7.743 -8.220 -4.886 12.304 hybrid contribution 0.295 -1.523 0.768 1.731 sum 8.038 -9.743 -4.118 13.285 Atomic orbital electron populations 1.70784 1.07942 1.31422 1.44792 1.27055 0.96344 1.05803 0.91601 0.83063 0.74289 0.71808 0.77923 1.21120 1.19736 1.19495 1.22379 0.94116 0.92028 1.58847 0.93373 1.18589 0.87243 0.89484 0.85948 0.92441 1.86526 1.39633 1.96337 1.16772 1.20821 0.99118 0.97350 0.91300 1.20636 0.94088 0.92608 0.99776 1.21226 1.06617 1.01444 0.84172 1.43702 0.98622 0.99526 1.03065 1.94573 1.58060 1.67598 1.20548 1.94460 1.28373 1.19587 1.93946 1.21276 0.97610 0.99560 0.87893 1.21442 0.95885 0.93694 1.00166 1.21409 0.97455 0.95438 0.87975 1.98404 1.90652 1.81894 1.29761 0.91909 0.78589 0.83236 0.78936 0.78706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.25 13.53 21.45 0.29 -52.96 15 2 C 0.00 -0.24 5.40 84.65 0.46 0.22 15 3 Si 1.11 47.39 29.90 68.60 2.05 49.44 15 4 H -0.29 -12.43 7.11 99.48 0.71 -11.73 15 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 7 C -0.64 -32.38 8.75 25.60 0.22 -32.16 15 8 H 0.05 2.44 7.74 -2.91 -0.02 2.42 15 9 C 0.24 11.34 2.19 29.10 0.06 11.40 15 10 H 0.06 2.90 6.98 -2.39 -0.02 2.88 15 11 O -0.59 -27.79 11.67 -148.98 -1.74 -29.53 15 12 C -0.08 -3.14 5.01 -19.84 -0.10 -3.24 15 13 C -0.05 -1.77 8.81 22.26 0.20 -1.58 15 14 C -0.05 -1.52 6.85 36.38 0.25 -1.27 15 15 N 0.03 1.06 4.45 -46.47 -0.21 0.85 15 16 O -0.20 -7.04 18.45 18.89 0.35 -6.69 15 17 O -0.14 -4.11 18.45 18.88 0.35 -3.76 15 18 C -0.04 -0.98 9.55 22.27 0.21 -0.77 15 19 C -0.09 -2.05 9.83 22.29 0.22 -1.83 15 20 C 0.00 0.15 6.31 22.33 0.14 0.29 15 21 Cl -0.04 -1.17 27.39 -2.72 -0.07 -1.24 15 22 H 0.27 16.15 6.47 -92.70 -0.60 15.55 15 23 H 0.37 15.45 7.32 -74.06 -0.54 14.91 15 24 H 0.15 5.20 5.96 -2.91 -0.02 5.18 15 25 H 0.19 2.87 7.61 -2.91 -0.02 2.85 15 26 H 0.20 2.62 8.06 -2.91 -0.02 2.59 15 Total: -1.00 -62.02 258.00 3.56 -58.46 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.88 Total: 14.37 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 1.66 Total: -28.94 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.08 Total: -52.11 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.04 Total: -39.99 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.05 Total: 49.44 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.07 Total: -1.24 kcal Total: -62.02 3.56 -58.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536170011.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.441 kcal (2) G-P(sol) polarization free energy of solvation -62.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds