Wall clock time and date at job start Mon Mar 30 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00170 * 2 1 4 4 H 1.48508 * 109.46805 * 269.99693 * 3 2 1 5 5 H 1.48497 * 109.47313 * 29.99491 * 3 2 1 6 6 H 1.48506 * 109.47192 * 150.00040 * 3 2 1 7 7 C 1.37886 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99569 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00027 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.46981 * 300.00067 * 9 7 2 11 11 O 1.42900 * 109.47275 * 59.99924 * 9 7 2 12 12 C 1.50695 * 109.47199 * 180.02562 * 9 7 2 13 13 C 1.38267 * 119.98246 * 280.02099 * 12 9 7 14 14 C 1.38193 * 120.00972 * 179.97438 * 13 12 9 15 15 C 1.38378 * 119.99124 * 359.97438 * 14 13 12 16 16 Cl 1.73597 * 120.01468 * 180.02562 * 15 14 13 17 17 C 1.38335 * 119.96747 * 359.97438 * 15 14 13 18 18 N 1.48021 * 120.00117 * 180.29442 * 17 15 14 19 19 O 1.21801 * 119.99540 * 179.72282 * 18 17 15 20 20 O 1.21803 * 120.00286 * 359.73426 * 18 17 15 21 21 C 1.38213 * 119.99016 * 99.99680 * 12 9 7 22 22 H 0.96998 * 119.99920 * 0.02562 * 1 2 3 23 23 H 0.96707 * 113.99700 * 60.00289 * 11 9 7 24 24 H 1.07999 * 119.99936 * 359.97438 * 13 12 9 25 25 H 1.08004 * 120.00864 * 179.97438 * 14 13 12 26 26 H 1.07995 * 119.99466 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8752 -0.6806 -0.8889 11 8 3.9874 -0.5203 1.1679 12 6 4.0138 -2.6150 0.0010 13 6 4.0472 -3.3362 1.1802 14 6 4.5072 -4.6393 1.1807 15 6 4.9339 -5.2226 0.0006 16 17 5.5113 -6.8597 0.0004 17 6 4.8993 -4.5008 -1.1790 18 7 5.3495 -5.1261 -2.4428 19 8 5.3142 -4.4922 -3.4823 20 8 5.7550 -6.2747 -2.4434 21 6 4.4404 -3.1968 -1.1779 22 1 -0.4850 0.8400 -0.0004 23 1 3.7018 -0.9237 1.9991 24 1 3.7137 -2.8811 2.1011 25 1 4.5336 -5.2025 2.1019 26 1 4.4134 -2.6333 -2.0988 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536176038.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:42 Heat of formation + Delta-G solvation = -25.895209 kcal Electronic energy + Delta-G solvation = -16559.875240 eV Core-core repulsion = 13440.340108 eV Total energy + Delta-G solvation = -3119.535132 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.98588 -39.59778 -37.01105 -36.31094 -36.00104 -32.57237 -31.86906 -31.41088 -27.44537 -26.36327 -23.58469 -22.73678 -21.07787 -18.77425 -18.47912 -17.66613 -17.36880 -16.78995 -15.80435 -15.45320 -14.99341 -14.29099 -13.72058 -13.38108 -13.20679 -12.67566 -12.15817 -12.05482 -11.97282 -11.70003 -11.23370 -11.17306 -10.92736 -10.77562 -10.46475 -10.29869 -9.55401 -9.49281 -9.04867 -8.79706 -8.55169 -6.38882 -4.55572 -0.03184 0.95611 1.45163 1.51803 1.88315 3.21787 3.32484 3.35391 3.54000 4.29144 4.30129 4.65426 4.89260 4.99161 5.01300 5.11111 5.48080 5.54348 5.66094 5.96052 6.14947 6.30962 6.58763 6.87882 7.15150 7.84568 7.96937 8.45700 8.64810 9.20618 10.70354 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.032582 B = 0.006060 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.165211 B = 4618.989838 C = 5004.002603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.091 3.909 3 Si 0.869 3.131 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.217 1.217 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.226 3.774 10 H 0.076 0.924 11 O -0.571 6.571 12 C -0.055 4.055 13 C -0.050 4.050 14 C -0.111 4.111 15 C -0.004 4.004 16 Cl -0.025 7.025 17 C -0.041 4.041 18 N 0.032 4.968 19 O -0.169 6.169 20 O -0.149 6.149 21 C -0.044 4.044 22 H 0.270 0.730 23 H 0.358 0.642 24 H 0.150 0.850 25 H 0.151 0.849 26 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.340 -7.723 3.304 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.116 4.116 3 Si 0.694 3.306 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.139 1.139 7 C -0.607 4.607 8 H 0.094 0.906 9 C 0.169 3.831 10 H 0.094 0.906 11 O -0.377 6.377 12 C -0.057 4.057 13 C -0.068 4.068 14 C -0.130 4.130 15 C -0.032 4.032 16 Cl 0.004 6.996 17 C -0.125 4.125 18 N 0.550 4.450 19 O -0.381 6.381 20 O -0.367 6.367 21 C -0.063 4.063 22 H 0.080 0.920 23 H 0.205 0.795 24 H 0.168 0.832 25 H 0.169 0.831 26 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.290 -7.073 3.447 12.174 hybrid contribution -0.045 0.058 -0.080 0.109 sum 9.244 -7.014 3.367 12.083 Atomic orbital electron populations 1.69918 1.06788 1.28047 1.46685 1.24975 0.94674 0.99951 0.92019 0.87045 0.82955 0.81694 0.78887 1.20877 1.21746 1.13934 1.21263 0.88062 0.95333 1.56002 0.90554 1.18962 0.94573 0.82535 0.87028 0.90608 1.86808 1.77795 1.56877 1.16256 1.21247 0.92919 1.00386 0.91127 1.21399 0.93446 0.92382 0.99604 1.21110 0.99828 0.95829 0.96256 1.20628 1.01078 0.88431 0.93098 1.98426 1.86267 1.16181 1.98720 1.20849 1.12392 0.95717 0.83550 1.43481 0.98316 1.00711 1.02460 1.94539 1.59417 1.63791 1.20374 1.94568 1.47333 1.01805 1.93028 1.20971 0.93340 0.90935 1.01069 0.92020 0.79453 0.83218 0.83111 0.82338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 13.96 55.43 0.77 -24.03 15 2 C 0.09 2.37 5.47 -17.82 -0.10 2.27 15 3 Si 0.87 19.68 26.99 -169.99 -4.59 15.09 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 15 6 H -0.22 -4.72 5.31 56.52 0.30 -4.42 15 7 C -0.57 -14.06 9.32 -34.44 -0.32 -14.38 15 8 H 0.08 2.08 7.98 -52.49 -0.42 1.66 15 9 C 0.23 4.56 2.55 -29.04 -0.07 4.48 15 10 H 0.08 1.55 7.43 -51.93 -0.39 1.17 15 11 O -0.57 -10.89 9.99 -35.23 -0.35 -11.24 15 12 C -0.06 -0.94 4.91 -104.62 -0.51 -1.46 15 13 C -0.05 -0.70 9.31 -39.59 -0.37 -1.07 15 14 C -0.11 -1.41 9.83 -39.55 -0.39 -1.79 15 15 C 0.00 -0.06 6.32 -39.49 -0.25 -0.31 15 16 Cl -0.03 -0.34 25.94 -51.86 -1.35 -1.68 15 17 C -0.04 -0.67 6.86 -79.91 -0.55 -1.22 15 18 N 0.03 0.56 4.45 33.98 0.15 0.71 15 19 O -0.17 -3.04 18.45 -29.46 -0.54 -3.59 15 20 O -0.15 -2.58 16.02 -29.46 -0.47 -3.05 15 21 C -0.04 -0.74 9.18 -39.59 -0.36 -1.10 15 22 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 23 H 0.36 5.65 7.50 45.56 0.34 5.99 15 24 H 0.15 1.77 6.79 -52.49 -0.36 1.42 15 25 H 0.15 1.42 8.06 -52.48 -0.42 0.99 15 26 H 0.16 2.57 7.59 -52.49 -0.40 2.17 15 LS Contribution 252.74 15.07 3.81 3.81 Total: -1.00 -28.76 252.74 -6.37 -35.13 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -0.88 Total: 3.43 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.92 Total: -14.58 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 0.92 Total: -23.32 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.37 Total: -17.88 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.59 Total: 15.09 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.35 Total: -1.68 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.76 -6.37 -35.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536176038.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.235 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds