Wall clock time and date at job start Mon Mar 30 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00170 * 2 1 4 4 H 1.48508 * 109.46805 * 269.99693 * 3 2 1 5 5 H 1.48497 * 109.47313 * 29.99491 * 3 2 1 6 6 H 1.48506 * 109.47192 * 150.00040 * 3 2 1 7 7 C 1.37886 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99569 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00027 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.46981 * 300.00067 * 9 7 2 11 11 O 1.42900 * 109.47275 * 59.99924 * 9 7 2 12 12 C 1.50695 * 109.47199 * 180.02562 * 9 7 2 13 13 C 1.38267 * 119.98246 * 280.02099 * 12 9 7 14 14 C 1.38193 * 120.00972 * 179.97438 * 13 12 9 15 15 C 1.38378 * 119.99124 * 359.97438 * 14 13 12 16 16 Cl 1.73597 * 120.01468 * 180.02562 * 15 14 13 17 17 C 1.38335 * 119.96747 * 359.97438 * 15 14 13 18 18 N 1.48021 * 120.00117 * 180.29442 * 17 15 14 19 19 O 1.21801 * 119.99540 * 179.72282 * 18 17 15 20 20 O 1.21803 * 120.00286 * 359.73426 * 18 17 15 21 21 C 1.38213 * 119.99016 * 99.99680 * 12 9 7 22 22 H 0.96998 * 119.99920 * 0.02562 * 1 2 3 23 23 H 0.96707 * 113.99700 * 60.00289 * 11 9 7 24 24 H 1.07999 * 119.99936 * 359.97438 * 13 12 9 25 25 H 1.08004 * 120.00864 * 179.97438 * 14 13 12 26 26 H 1.07995 * 119.99466 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8752 -0.6806 -0.8889 11 8 3.9874 -0.5203 1.1679 12 6 4.0138 -2.6150 0.0010 13 6 4.0472 -3.3362 1.1802 14 6 4.5072 -4.6393 1.1807 15 6 4.9339 -5.2226 0.0006 16 17 5.5113 -6.8597 0.0004 17 6 4.8993 -4.5008 -1.1790 18 7 5.3495 -5.1261 -2.4428 19 8 5.3142 -4.4922 -3.4823 20 8 5.7550 -6.2747 -2.4434 21 6 4.4404 -3.1968 -1.1779 22 1 -0.4850 0.8400 -0.0004 23 1 3.7018 -0.9237 1.9991 24 1 3.7137 -2.8811 2.1011 25 1 4.5336 -5.2025 2.1019 26 1 4.4134 -2.6333 -2.0988 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536176038.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:42 Heat of formation + Delta-G solvation = -44.222693 kcal Electronic energy + Delta-G solvation = -16560.669979 eV Core-core repulsion = 13440.340108 eV Total energy + Delta-G solvation = -3120.329871 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.32328 -40.85885 -38.28889 -37.70129 -37.34619 -34.50743 -33.08605 -32.73990 -29.15522 -27.65803 -25.16239 -23.96867 -22.50993 -20.11992 -19.85350 -19.45481 -18.72251 -17.97879 -17.11011 -16.96305 -16.78320 -15.42808 -15.02557 -14.90999 -14.82865 -14.13999 -13.67466 -13.39526 -13.24012 -13.10930 -12.87229 -12.54366 -12.46442 -12.28206 -12.05370 -11.52098 -11.33264 -10.90071 -10.69177 -10.46076 -9.92845 -8.39255 -6.57580 -1.32179 -0.23409 0.18279 0.23386 0.72229 1.41882 1.49053 1.74372 2.13992 2.40356 2.97295 3.13995 3.41552 3.78837 3.85712 3.86095 3.99938 4.34451 4.50459 4.73522 4.86027 5.04020 5.29373 5.34706 5.40681 6.01098 6.47246 6.55948 7.07898 7.24589 8.73767 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.032582 B = 0.006060 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.165211 B = 4618.989838 C = 5004.002603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.037 3.963 3 Si 0.931 3.069 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.041 0.959 9 C 0.237 3.763 10 H 0.071 0.929 11 O -0.571 6.571 12 C -0.077 4.077 13 C -0.039 4.039 14 C -0.093 4.093 15 C -0.003 4.003 16 Cl -0.011 7.011 17 C -0.056 4.056 18 N 0.031 4.969 19 O -0.199 6.199 20 O -0.140 6.140 21 C -0.052 4.052 22 H 0.269 0.731 23 H 0.375 0.625 24 H 0.177 0.823 25 H 0.194 0.806 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.910 -8.346 5.026 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.164 4.164 3 Si 0.755 3.245 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.119 1.119 7 C -0.599 4.599 8 H 0.059 0.941 9 C 0.179 3.821 10 H 0.088 0.912 11 O -0.380 6.380 12 C -0.078 4.078 13 C -0.057 4.057 14 C -0.112 4.112 15 C -0.031 4.031 16 Cl 0.018 6.982 17 C -0.141 4.141 18 N 0.547 4.453 19 O -0.405 6.405 20 O -0.362 6.362 21 C -0.071 4.071 22 H 0.078 0.922 23 H 0.225 0.775 24 H 0.194 0.806 25 H 0.211 0.789 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.874 -7.673 5.140 14.267 hybrid contribution -0.511 0.065 -0.534 0.742 sum 10.363 -7.608 4.607 13.656 Atomic orbital electron populations 1.70050 1.08568 1.28721 1.49611 1.25791 0.95162 1.03399 0.92043 0.86108 0.82284 0.77587 0.78539 1.21362 1.22427 1.11866 1.21516 0.90707 0.93551 1.54111 0.94085 1.18579 0.91500 0.84730 0.87323 0.91183 1.86722 1.77383 1.57115 1.16734 1.20961 0.95040 0.99289 0.92537 1.21738 0.91867 0.92731 0.99385 1.21534 0.97521 0.95191 0.96962 1.20924 1.00251 0.88966 0.92980 1.98438 1.85963 1.15078 1.98683 1.20919 1.13647 0.95962 0.83522 1.43653 0.98130 1.00673 1.02817 1.94541 1.60850 1.64022 1.21079 1.94536 1.46690 1.01859 1.93106 1.20918 0.93845 0.91340 1.01029 0.92160 0.77511 0.80584 0.78909 0.82904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.74 13.96 21.45 0.30 -53.44 15 2 C 0.04 1.96 5.47 84.66 0.46 2.43 15 3 Si 0.93 40.53 26.99 68.60 1.85 42.38 15 4 H -0.29 -12.62 7.11 99.48 0.71 -11.91 15 5 H -0.30 -13.16 7.11 99.48 0.71 -12.45 15 6 H -0.20 -7.88 5.31 99.48 0.53 -7.35 15 7 C -0.56 -27.74 9.32 25.60 0.24 -27.50 15 8 H 0.04 2.27 7.98 -2.91 -0.02 2.25 15 9 C 0.24 9.21 2.55 29.10 0.07 9.29 15 10 H 0.07 2.81 7.43 -2.38 -0.02 2.79 15 11 O -0.57 -20.14 9.99 -148.98 -1.49 -21.63 15 12 C -0.08 -2.50 4.91 -19.86 -0.10 -2.59 15 13 C -0.04 -0.97 9.31 22.27 0.21 -0.76 15 14 C -0.09 -1.98 9.83 22.29 0.22 -1.76 15 15 C 0.00 -0.07 6.32 22.33 0.14 0.07 15 16 Cl -0.01 -0.27 25.94 -2.72 -0.07 -0.34 15 17 C -0.06 -1.78 6.86 36.40 0.25 -1.53 15 18 N 0.03 1.08 4.45 -46.41 -0.21 0.87 15 19 O -0.20 -7.28 18.45 18.88 0.35 -6.93 15 20 O -0.14 -4.65 16.02 18.88 0.30 -4.35 15 21 C -0.05 -1.71 9.18 22.26 0.20 -1.51 15 22 H 0.27 14.68 8.31 -92.71 -0.77 13.91 15 23 H 0.38 10.51 7.50 -74.05 -0.56 9.95 15 24 H 0.18 3.39 6.79 -2.91 -0.02 3.37 15 25 H 0.19 2.49 8.06 -2.91 -0.02 2.47 15 26 H 0.15 5.06 7.59 -2.91 -0.02 5.04 15 Total: -1.00 -62.48 252.74 3.24 -59.24 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.51 Total: 8.06 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 1.70 Total: -23.87 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.09 Total: -52.57 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.84 Total: -32.91 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.85 Total: 42.38 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.07 Total: -0.34 kcal Total: -62.48 3.24 -59.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536176038.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.013 kcal (2) G-P(sol) polarization free energy of solvation -62.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds