Wall clock time and date at job start Mon Mar 30 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 O 1.42899 * 109.47038 * 299.72024 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38261 * 119.98622 * 84.99898 * 12 9 7 14 14 C 1.38198 * 120.00857 * 180.02562 * 13 12 9 15 15 C 1.38375 * 119.98678 * 359.97438 * 14 13 12 16 16 Cl 1.73601 * 120.00899 * 179.97438 * 15 14 13 17 17 C 1.38330 * 119.97526 * 359.97438 * 15 14 13 18 18 N 1.48022 * 120.00468 * 180.02562 * 17 15 14 19 19 O 1.21795 * 119.99831 * 179.97438 * 18 17 15 20 20 O 1.21805 * 119.99878 * 359.97438 * 18 17 15 21 21 C 1.38225 * 119.98078 * 264.72180 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 0.96699 * 113.99712 * 300.00343 * 11 9 7 24 24 H 1.07995 * 119.99316 * 359.97438 * 13 12 9 25 25 H 1.08006 * 120.00355 * 179.97438 * 14 13 12 26 26 H 1.07992 * 119.99741 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 8 0.4293 -2.5801 1.1610 12 6 2.2302 -3.6447 -0.0104 13 6 2.7585 -4.1074 1.1806 14 6 3.6570 -5.1574 1.1765 15 6 4.0274 -5.7460 -0.0198 16 17 5.1565 -7.0646 -0.0257 17 6 3.4977 -5.2832 -1.2109 18 7 3.8931 -5.9127 -2.4909 19 8 3.4262 -5.5055 -3.5396 20 8 4.6853 -6.8380 -2.4955 21 6 2.5955 -4.2359 -1.2052 22 1 -0.4850 0.8401 -0.0004 23 1 0.9214 -2.5384 1.9924 24 1 2.4696 -3.6476 2.1141 25 1 4.0699 -5.5185 2.1069 26 1 2.1787 -3.8772 -2.1347 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536176040.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:45 Heat of formation + Delta-G solvation = -32.193448 kcal Electronic energy + Delta-G solvation = -16518.110776 eV Core-core repulsion = 13398.302533 eV Total energy + Delta-G solvation = -3119.808244 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.93466 -39.48354 -36.89047 -36.24311 -35.71220 -32.48343 -31.76830 -31.23749 -27.00453 -26.29270 -23.69012 -22.66978 -21.11822 -18.67327 -18.40331 -17.40019 -17.28730 -16.70636 -15.67060 -15.30816 -14.84915 -14.23707 -13.71233 -13.37272 -12.95975 -12.37893 -12.04281 -11.91982 -11.76304 -11.39208 -11.15278 -11.11379 -11.05040 -10.86557 -10.40209 -10.26526 -9.70368 -9.46103 -9.03377 -8.75892 -8.43761 -6.29715 -4.52165 0.02970 1.04072 1.51079 1.57819 1.94052 3.13155 3.21234 3.22344 3.44452 4.18128 4.37504 4.75325 4.96320 5.06605 5.09244 5.23144 5.59739 5.75844 5.86394 6.13790 6.31562 6.41591 6.66554 7.25667 7.52660 7.73647 7.89634 8.48989 8.94356 9.24937 10.73504 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.005923 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.496902 B = 4726.168536 C = 5033.551121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.084 3.916 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.576 4.576 8 H 0.060 0.940 9 C 0.260 3.740 10 H 0.079 0.921 11 O -0.554 6.554 12 C -0.060 4.060 13 C -0.056 4.056 14 C -0.111 4.111 15 C -0.008 4.008 16 Cl -0.028 7.028 17 C -0.041 4.041 18 N 0.032 4.968 19 O -0.169 6.169 20 O -0.151 6.151 21 C -0.044 4.044 22 H 0.266 0.734 23 H 0.348 0.652 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.286 -8.763 3.043 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.124 4.124 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.613 4.613 8 H 0.078 0.922 9 C 0.202 3.798 10 H 0.097 0.903 11 O -0.357 6.357 12 C -0.062 4.062 13 C -0.074 4.074 14 C -0.131 4.131 15 C -0.037 4.037 16 Cl 0.001 6.999 17 C -0.125 4.125 18 N 0.550 4.450 19 O -0.382 6.382 20 O -0.369 6.369 21 C -0.064 4.064 22 H 0.076 0.924 23 H 0.193 0.807 24 H 0.166 0.834 25 H 0.167 0.833 26 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.526 -8.510 3.178 10.632 hybrid contribution 1.217 0.709 -0.009 1.409 sum 6.743 -7.801 3.169 10.787 Atomic orbital electron populations 1.70053 1.06009 1.27244 1.45310 1.25032 0.94800 0.99386 0.93196 0.86533 0.79865 0.82701 0.78567 1.20191 1.20824 1.19650 1.21429 0.93235 0.90012 1.56617 0.92154 1.18634 0.86555 0.87125 0.87491 0.90349 1.86686 1.37754 1.96066 1.15233 1.21759 0.97247 0.96412 0.90775 1.21413 0.92884 0.93353 0.99798 1.21102 0.98995 0.96989 0.95966 1.20592 0.96162 0.94015 0.92881 1.98420 1.58237 1.44440 1.98790 1.20885 1.06754 1.02193 0.82671 1.43502 0.99068 0.99783 1.02623 1.94537 1.57037 1.66619 1.19969 1.94562 1.28695 1.19724 1.93921 1.20993 0.93059 0.90919 1.01393 0.92398 0.80744 0.83381 0.83285 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.96 12.84 55.43 0.71 -22.25 15 2 C 0.08 2.13 5.40 -17.82 -0.10 2.04 15 3 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 15 4 H -0.28 -6.06 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 7 C -0.58 -14.05 8.74 -34.44 -0.30 -14.35 15 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 15 9 C 0.26 5.73 3.07 -29.03 -0.09 5.64 15 10 H 0.08 1.90 8.05 -51.93 -0.42 1.48 15 11 O -0.55 -12.26 12.54 -35.23 -0.44 -12.70 15 12 C -0.06 -1.09 4.94 -104.62 -0.52 -1.60 15 13 C -0.06 -0.83 9.33 -39.59 -0.37 -1.20 15 14 C -0.11 -1.46 9.83 -39.55 -0.39 -1.85 15 15 C -0.01 -0.12 6.32 -39.50 -0.25 -0.37 15 16 Cl -0.03 -0.39 25.94 -51.86 -1.35 -1.73 15 17 C -0.04 -0.70 6.86 -79.91 -0.55 -1.24 15 18 N 0.03 0.57 4.45 33.98 0.15 0.72 15 19 O -0.17 -3.13 18.45 -29.46 -0.54 -3.67 15 20 O -0.15 -2.66 16.02 -29.46 -0.47 -3.14 15 21 C -0.04 -0.78 9.19 -39.59 -0.36 -1.14 15 22 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 23 H 0.35 6.41 7.38 45.56 0.34 6.74 15 24 H 0.15 1.86 6.61 -52.49 -0.35 1.51 15 25 H 0.15 1.46 8.06 -52.48 -0.42 1.04 15 26 H 0.16 2.74 7.61 -52.49 -0.40 2.34 15 LS Contribution 258.55 15.07 3.90 3.90 Total: -1.00 -27.83 258.55 -6.78 -34.60 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -0.79 Total: 3.77 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -2.92 Total: -14.08 kcal Atomic # 7 Polarization: -22.39 SS G_CDS: 0.86 Total: -21.52 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.46 Total: -19.51 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.35 Total: -1.73 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.83 -6.78 -34.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536176040.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.410 kcal (2) G-P(sol) polarization free energy of solvation -27.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds