Wall clock time and date at job start Mon Mar 30 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 O 1.42899 * 109.47038 * 299.72024 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38261 * 119.98622 * 84.99898 * 12 9 7 14 14 C 1.38198 * 120.00857 * 180.02562 * 13 12 9 15 15 C 1.38375 * 119.98678 * 359.97438 * 14 13 12 16 16 Cl 1.73601 * 120.00899 * 179.97438 * 15 14 13 17 17 C 1.38330 * 119.97526 * 359.97438 * 15 14 13 18 18 N 1.48022 * 120.00468 * 180.02562 * 17 15 14 19 19 O 1.21795 * 119.99831 * 179.97438 * 18 17 15 20 20 O 1.21805 * 119.99878 * 359.97438 * 18 17 15 21 21 C 1.38225 * 119.98078 * 264.72180 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 0.96699 * 113.99712 * 300.00343 * 11 9 7 24 24 H 1.07995 * 119.99316 * 359.97438 * 13 12 9 25 25 H 1.08006 * 120.00355 * 179.97438 * 14 13 12 26 26 H 1.07992 * 119.99741 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 8 0.4293 -2.5801 1.1610 12 6 2.2302 -3.6447 -0.0104 13 6 2.7585 -4.1074 1.1806 14 6 3.6570 -5.1574 1.1765 15 6 4.0274 -5.7460 -0.0198 16 17 5.1565 -7.0646 -0.0257 17 6 3.4977 -5.2832 -1.2109 18 7 3.8931 -5.9127 -2.4909 19 8 3.4262 -5.5055 -3.5396 20 8 4.6853 -6.8380 -2.4955 21 6 2.5955 -4.2359 -1.2052 22 1 -0.4850 0.8401 -0.0004 23 1 0.9214 -2.5384 1.9924 24 1 2.4696 -3.6476 2.1141 25 1 4.0699 -5.5185 2.1069 26 1 2.1787 -3.8772 -2.1347 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536176040.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:44 Heat of formation + Delta-G solvation = -49.146427 kcal Electronic energy + Delta-G solvation = -16518.845913 eV Core-core repulsion = 13398.302533 eV Total energy + Delta-G solvation = -3120.543380 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.31990 -40.80522 -38.19201 -37.66449 -37.22872 -34.37687 -33.04800 -32.64373 -28.75777 -27.63728 -25.34617 -23.94167 -22.58790 -20.05748 -19.81041 -19.19722 -18.71864 -17.95995 -17.01076 -16.85697 -16.71115 -15.44740 -15.13103 -14.82173 -14.62287 -13.75266 -13.56060 -13.24338 -13.19970 -12.99320 -12.84429 -12.60069 -12.52290 -12.29581 -12.11105 -11.51747 -11.42272 -10.82483 -10.67962 -10.51804 -9.89842 -8.21283 -6.48901 -1.31095 -0.20510 0.19611 0.24223 0.73293 1.40265 1.43268 1.51714 2.14994 2.38293 3.04771 3.16430 3.45966 3.82166 3.88482 3.92937 4.22309 4.39365 4.54070 4.81779 4.95871 5.05907 5.34939 5.54702 5.61568 5.88878 6.48098 6.60810 7.25154 7.41656 8.82010 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.005923 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.496902 B = 4726.168536 C = 5033.551121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.036 3.964 3 Si 0.957 3.043 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.580 4.580 8 H 0.061 0.939 9 C 0.264 3.736 10 H 0.042 0.958 11 O -0.568 6.568 12 C -0.079 4.079 13 C -0.042 4.042 14 C -0.090 4.090 15 C -0.005 4.005 16 Cl -0.011 7.011 17 C -0.054 4.054 18 N 0.032 4.968 19 O -0.204 6.204 20 O -0.136 6.136 21 C -0.053 4.053 22 H 0.265 0.735 23 H 0.364 0.636 24 H 0.175 0.825 25 H 0.195 0.805 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 -9.501 4.935 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.168 4.168 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.617 4.617 8 H 0.079 0.921 9 C 0.207 3.793 10 H 0.059 0.941 11 O -0.374 6.374 12 C -0.081 4.081 13 C -0.060 4.060 14 C -0.109 4.109 15 C -0.033 4.033 16 Cl 0.019 6.981 17 C -0.138 4.138 18 N 0.547 4.453 19 O -0.408 6.408 20 O -0.359 6.359 21 C -0.073 4.073 22 H 0.074 0.926 23 H 0.211 0.789 24 H 0.192 0.808 25 H 0.212 0.788 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.279 -9.219 5.029 12.778 hybrid contribution 0.742 0.793 -0.522 1.205 sum 8.022 -8.426 4.507 12.476 Atomic orbital electron populations 1.70169 1.07492 1.27842 1.47268 1.25789 0.95404 1.02582 0.93046 0.85592 0.78930 0.79033 0.78282 1.20447 1.20725 1.18657 1.21757 0.93355 0.91237 1.55343 0.92104 1.18222 0.86532 0.88222 0.86365 0.94061 1.86619 1.38535 1.96179 1.16049 1.21291 0.97999 0.96380 0.92380 1.21706 0.91897 0.93111 0.99326 1.21533 0.97275 0.95271 0.96820 1.20888 0.95692 0.94059 0.92673 1.98434 1.57437 1.43509 1.98750 1.20914 1.07587 1.02607 0.82722 1.43659 0.98915 0.99725 1.02959 1.94546 1.58183 1.67489 1.20627 1.94526 1.28052 1.19338 1.93987 1.20845 0.93743 0.91641 1.01063 0.92563 0.78882 0.80776 0.78767 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.94 12.84 21.45 0.28 -48.66 15 2 C 0.04 1.83 5.40 84.66 0.46 2.29 15 3 Si 0.96 40.12 29.54 68.60 2.03 42.14 15 4 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 7 C -0.58 -28.32 8.74 25.60 0.22 -28.09 15 8 H 0.06 2.91 7.74 -2.91 -0.02 2.88 15 9 C 0.26 11.84 3.07 29.10 0.09 11.93 15 10 H 0.04 2.12 8.05 -2.39 -0.02 2.10 15 11 O -0.57 -25.05 12.54 -148.98 -1.87 -26.92 15 12 C -0.08 -2.79 4.94 -19.86 -0.10 -2.88 15 13 C -0.04 -1.11 9.33 22.27 0.21 -0.90 15 14 C -0.09 -1.97 9.83 22.29 0.22 -1.75 15 15 C 0.00 -0.12 6.32 22.32 0.14 0.02 15 16 Cl -0.01 -0.26 25.94 -2.72 -0.07 -0.33 15 17 C -0.05 -1.77 6.86 36.40 0.25 -1.52 15 18 N 0.03 1.12 4.45 -46.41 -0.21 0.91 15 19 O -0.20 -7.73 18.45 18.89 0.35 -7.39 15 20 O -0.14 -4.58 16.02 18.88 0.30 -4.28 15 21 C -0.05 -1.89 9.19 22.27 0.20 -1.69 15 22 H 0.27 13.85 8.31 -92.70 -0.77 13.08 15 23 H 0.36 12.89 7.38 -74.06 -0.55 12.34 15 24 H 0.17 3.64 6.61 -2.91 -0.02 3.62 15 25 H 0.20 2.55 8.06 -2.91 -0.02 2.53 15 26 H 0.15 5.37 7.61 -2.91 -0.02 5.35 15 Total: -1.00 -60.18 258.55 3.20 -56.98 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.70 Total: 10.16 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 1.69 Total: -22.62 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.07 Total: -47.75 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.22 Total: -38.59 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.07 Total: -0.33 kcal Total: -60.18 3.20 -56.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536176040.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.836 kcal (2) G-P(sol) polarization free energy of solvation -60.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds