Wall clock time and date at job start Mon Mar 30 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99903 * 2 1 4 4 H 1.48508 * 109.46782 * 239.99679 * 3 2 1 5 5 H 1.48497 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47144 * 120.00073 * 3 2 1 7 7 C 1.37879 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99970 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47328 * 300.00026 * 9 7 2 11 11 O 1.42899 * 109.47042 * 59.99897 * 9 7 2 12 12 C 1.50697 * 109.46799 * 179.97438 * 9 7 2 13 13 C 1.38270 * 119.98864 * 100.00495 * 12 9 7 14 14 C 1.38225 * 120.02300 * 180.02562 * 13 12 9 15 15 C 1.38236 * 120.01619 * 359.97438 * 14 13 12 16 16 N 1.48016 * 120.00739 * 180.02562 * 15 14 13 17 17 O 1.21802 * 120.00083 * 0.02562 * 16 15 14 18 18 O 1.21795 * 120.00163 * 179.97438 * 16 15 14 19 19 C 1.38328 * 119.98493 * 0.02562 * 15 14 13 20 20 Cl 1.73603 * 120.01214 * 180.02562 * 19 15 14 21 21 C 1.38190 * 119.99947 * 280.00036 * 12 9 7 22 22 H 0.96996 * 119.99544 * 0.02562 * 1 2 3 23 23 H 0.96706 * 114.00189 * 60.00178 * 11 9 7 24 24 H 1.07994 * 119.98672 * 0.26976 * 13 12 9 25 25 H 1.07995 * 119.98871 * 180.02562 * 14 13 12 26 26 H 1.07997 * 120.00377 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 8 0.4299 -2.5751 -1.1665 12 6 2.2304 -3.6446 0.0005 13 6 2.5214 -4.3050 1.1799 14 6 3.4199 -5.3554 1.1808 15 6 4.0278 -5.7464 0.0025 16 7 4.9895 -6.8715 0.0036 17 8 5.2451 -7.4533 1.0427 18 8 5.5247 -7.2163 -1.0348 19 6 3.7370 -5.0860 -1.1777 20 17 4.4995 -5.5769 -2.6580 21 6 2.8373 -4.0346 -1.1780 22 1 -0.4849 0.8401 -0.0004 23 1 0.9224 -2.5300 -1.9976 24 1 2.0434 -4.0027 2.0999 25 1 3.6465 -5.8711 2.1022 26 1 2.6096 -3.5190 -2.0992 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536199378.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:37 Heat of formation + Delta-G solvation = -33.410723 kcal Electronic energy + Delta-G solvation = -16471.043306 eV Core-core repulsion = 13351.182277 eV Total energy + Delta-G solvation = -3119.861029 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.96551 -39.49465 -36.79408 -36.29814 -35.82420 -32.50069 -31.80521 -30.98729 -27.86975 -25.68395 -23.37053 -22.85877 -21.09888 -19.19771 -18.46560 -17.41248 -17.33486 -16.37867 -15.66498 -15.08454 -14.86331 -14.05702 -13.83802 -13.60680 -12.94697 -12.76998 -11.92965 -11.79138 -11.55711 -11.47572 -11.21696 -11.18323 -11.08797 -10.92692 -10.47058 -10.30404 -9.75947 -9.20352 -9.00371 -8.82845 -8.60882 -6.33587 -4.56396 0.03324 1.01460 1.50533 1.57610 1.95936 3.11958 3.18457 3.19569 3.44087 4.15055 4.37866 4.76187 4.89377 5.05466 5.16300 5.22076 5.56692 5.74306 5.92736 6.07594 6.31353 6.40496 6.65035 7.20030 7.48718 7.68327 7.85944 8.44624 8.91280 9.20756 10.69599 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.030799 B = 0.005807 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.893040 B = 4820.682780 C = 5027.220475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.085 3.915 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.577 4.577 8 H 0.061 0.939 9 C 0.254 3.746 10 H 0.082 0.918 11 O -0.554 6.554 12 C -0.001 4.001 13 C -0.118 4.118 14 C -0.044 4.044 15 C -0.070 4.070 16 N 0.037 4.963 17 O -0.182 6.182 18 O -0.152 6.152 19 C 0.020 3.980 20 Cl -0.023 7.023 21 C -0.110 4.110 22 H 0.267 0.733 23 H 0.349 0.651 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -7.276 -0.686 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.124 4.124 3 Si 0.724 3.276 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.614 4.614 8 H 0.079 0.921 9 C 0.197 3.803 10 H 0.100 0.900 11 O -0.358 6.358 12 C -0.002 4.002 13 C -0.137 4.137 14 C -0.063 4.063 15 C -0.154 4.154 16 N 0.553 4.447 17 O -0.392 6.392 18 O -0.370 6.370 19 C -0.008 4.008 20 Cl 0.006 6.994 21 C -0.129 4.129 22 H 0.077 0.923 23 H 0.195 0.805 24 H 0.169 0.831 25 H 0.172 0.828 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.808 -6.740 -0.330 7.749 hybrid contribution 1.330 0.649 -0.448 1.546 sum 5.138 -6.091 -0.778 8.007 Atomic orbital electron populations 1.70038 1.06015 1.27432 1.45073 1.25025 0.94812 0.99381 0.93137 0.86573 0.79669 0.82255 0.79065 1.19828 1.20878 1.19861 1.21377 0.93263 0.89853 1.56891 0.92088 1.18765 0.86650 0.87233 0.87678 0.90043 1.86678 1.37740 1.96063 1.15283 1.22102 0.93131 0.93736 0.91275 1.21246 0.98036 0.94545 0.99837 1.20993 0.93346 0.95870 0.96116 1.20702 1.02531 0.95941 0.96275 1.43461 1.00023 1.00877 1.00304 1.94496 1.67568 1.55149 1.21939 1.94576 1.51842 1.69257 1.21316 1.20758 0.96706 0.96223 0.87112 1.98429 1.79408 1.90247 1.31319 1.20996 0.95754 0.95231 1.00969 0.92289 0.80545 0.83126 0.82815 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.59 12.84 55.43 0.71 -21.87 15 2 C 0.08 2.12 5.40 -17.82 -0.10 2.02 15 3 Si 0.90 19.33 29.54 -169.99 -5.02 14.31 15 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.27 -5.85 7.11 56.52 0.40 -5.44 15 7 C -0.58 -13.82 8.74 -34.44 -0.30 -14.12 15 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 15 9 C 0.25 5.48 3.07 -29.04 -0.09 5.39 15 10 H 0.08 1.88 8.00 -51.93 -0.42 1.46 15 11 O -0.55 -12.31 12.58 -35.23 -0.44 -12.76 15 12 C 0.00 -0.02 4.91 -104.63 -0.51 -0.54 15 13 C -0.12 -1.79 9.67 -39.57 -0.38 -2.17 15 14 C -0.04 -0.63 9.55 -39.59 -0.38 -1.01 15 15 C -0.07 -1.13 6.85 -79.92 -0.55 -1.67 15 16 N 0.04 0.63 4.45 33.98 0.15 0.78 15 17 O -0.18 -3.07 18.45 -29.46 -0.54 -3.61 15 18 O -0.15 -2.63 16.02 -29.46 -0.47 -3.10 15 19 C 0.02 0.33 6.32 -39.50 -0.25 0.08 15 20 Cl -0.02 -0.35 25.94 -51.86 -1.35 -1.69 15 21 C -0.11 -1.80 9.10 -39.55 -0.36 -2.16 15 22 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 23 H 0.35 6.67 7.49 45.56 0.34 7.01 15 24 H 0.15 1.99 8.04 -52.49 -0.42 1.57 15 25 H 0.15 1.85 7.61 -52.49 -0.40 1.45 15 26 H 0.15 2.29 6.78 -52.49 -0.36 1.94 15 LS Contribution 258.74 15.07 3.90 3.90 Total: -1.00 -27.15 258.74 -6.77 -33.92 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -0.79 Total: 4.30 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.92 Total: -14.18 kcal Atomic # 7 Polarization: -21.96 SS G_CDS: 0.86 Total: -21.10 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.46 Total: -19.46 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.35 Total: -1.69 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.15 -6.77 -33.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536199378.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.513 kcal (2) G-P(sol) polarization free energy of solvation -27.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds