Wall clock time and date at job start Mon Mar 30 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99903 * 2 1 4 4 H 1.48508 * 109.46782 * 239.99679 * 3 2 1 5 5 H 1.48497 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47144 * 120.00073 * 3 2 1 7 7 C 1.37879 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99970 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47328 * 300.00026 * 9 7 2 11 11 O 1.42899 * 109.47042 * 59.99897 * 9 7 2 12 12 C 1.50697 * 109.46799 * 179.97438 * 9 7 2 13 13 C 1.38270 * 119.98864 * 100.00495 * 12 9 7 14 14 C 1.38225 * 120.02300 * 180.02562 * 13 12 9 15 15 C 1.38236 * 120.01619 * 359.97438 * 14 13 12 16 16 N 1.48016 * 120.00739 * 180.02562 * 15 14 13 17 17 O 1.21802 * 120.00083 * 0.02562 * 16 15 14 18 18 O 1.21795 * 120.00163 * 179.97438 * 16 15 14 19 19 C 1.38328 * 119.98493 * 0.02562 * 15 14 13 20 20 Cl 1.73603 * 120.01214 * 180.02562 * 19 15 14 21 21 C 1.38190 * 119.99947 * 280.00036 * 12 9 7 22 22 H 0.96996 * 119.99544 * 0.02562 * 1 2 3 23 23 H 0.96706 * 114.00189 * 60.00178 * 11 9 7 24 24 H 1.07994 * 119.98672 * 0.26976 * 13 12 9 25 25 H 1.07995 * 119.98871 * 180.02562 * 14 13 12 26 26 H 1.07997 * 120.00377 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 8 0.4299 -2.5751 -1.1665 12 6 2.2304 -3.6446 0.0005 13 6 2.5214 -4.3050 1.1799 14 6 3.4199 -5.3554 1.1808 15 6 4.0278 -5.7464 0.0025 16 7 4.9895 -6.8715 0.0036 17 8 5.2451 -7.4533 1.0427 18 8 5.5247 -7.2163 -1.0348 19 6 3.7370 -5.0860 -1.1777 20 17 4.4995 -5.5769 -2.6580 21 6 2.8373 -4.0346 -1.1780 22 1 -0.4849 0.8401 -0.0004 23 1 0.9224 -2.5300 -1.9976 24 1 2.0434 -4.0027 2.0999 25 1 3.6465 -5.8711 2.1022 26 1 2.6096 -3.5190 -2.0992 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536199378.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:37 Heat of formation + Delta-G solvation = -49.288799 kcal Electronic energy + Delta-G solvation = -16471.731831 eV Core-core repulsion = 13351.182277 eV Total energy + Delta-G solvation = -3120.549554 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.27387 -40.80999 -38.10078 -37.66568 -37.32432 -34.36987 -33.19999 -32.22764 -29.47489 -27.23087 -24.87265 -24.14960 -22.54788 -20.47175 -19.78080 -19.18756 -18.67675 -17.85050 -17.00625 -16.73704 -16.35713 -15.40401 -15.25538 -14.89144 -14.57064 -14.28542 -13.43897 -13.19275 -13.15183 -12.83544 -12.73588 -12.68173 -12.50385 -12.25406 -12.16694 -11.64682 -11.37756 -10.84250 -10.57575 -10.30113 -10.13680 -8.21697 -6.48977 -1.27478 -0.20518 0.22417 0.26206 0.72496 1.42135 1.44066 1.50972 2.14658 2.38457 3.05571 3.16119 3.49856 3.75010 3.85849 3.97927 4.22860 4.40544 4.54320 4.75767 4.97631 5.10356 5.36566 5.52966 5.62185 5.87753 6.52986 6.59672 7.22831 7.37538 8.81412 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.030799 B = 0.005807 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.893040 B = 4820.682780 C = 5027.220475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.039 3.961 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.581 4.581 8 H 0.060 0.940 9 C 0.257 3.743 10 H 0.060 0.940 11 O -0.571 6.571 12 C -0.017 4.017 13 C -0.111 4.111 14 C -0.030 4.030 15 C -0.076 4.076 16 N 0.035 4.965 17 O -0.174 6.174 18 O -0.167 6.167 19 C 0.015 3.985 20 Cl -0.015 7.015 21 C -0.109 4.109 22 H 0.266 0.734 23 H 0.361 0.639 24 H 0.170 0.830 25 H 0.183 0.817 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 -7.677 -0.243 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.165 4.165 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.618 4.618 8 H 0.079 0.921 9 C 0.200 3.800 10 H 0.078 0.922 11 O -0.376 6.376 12 C -0.018 4.018 13 C -0.130 4.130 14 C -0.049 4.049 15 C -0.160 4.160 16 N 0.551 4.449 17 O -0.387 6.387 18 O -0.381 6.381 19 C -0.013 4.013 20 Cl 0.015 6.985 21 C -0.128 4.128 22 H 0.075 0.925 23 H 0.208 0.792 24 H 0.188 0.812 25 H 0.201 0.799 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.881 -7.151 0.075 8.658 hybrid contribution 1.034 0.682 -0.575 1.366 sum 5.914 -6.469 -0.500 8.779 Atomic orbital electron populations 1.70149 1.07402 1.27938 1.47058 1.25740 0.95376 1.02415 0.93017 0.85675 0.78441 0.78789 0.79120 1.19444 1.21057 1.19394 1.21698 0.93367 0.91137 1.55589 0.92138 1.18478 0.86746 0.88079 0.86731 0.92236 1.86614 1.38670 1.96189 1.16115 1.21716 0.93482 0.93684 0.92907 1.21427 0.97736 0.94128 0.99706 1.21250 0.91971 0.95066 0.96616 1.20940 1.02445 0.95689 0.96960 1.43570 1.00096 1.01021 1.00243 1.94485 1.67306 1.55045 1.21822 1.94582 1.52417 1.69712 1.21429 1.20761 0.96765 0.96160 0.87639 1.98433 1.79164 1.90106 1.30811 1.21001 0.95571 0.95308 1.00887 0.92519 0.79226 0.81212 0.79944 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.63 12.84 21.45 0.28 -47.35 15 2 C 0.04 1.94 5.40 84.65 0.46 2.40 15 3 Si 0.95 39.34 29.54 68.60 2.03 41.36 15 4 H -0.27 -10.84 7.11 99.48 0.71 -10.14 15 5 H -0.29 -11.72 7.11 99.48 0.71 -11.01 15 6 H -0.27 -10.79 7.11 99.48 0.71 -10.09 15 7 C -0.58 -27.59 8.74 25.60 0.22 -27.37 15 8 H 0.06 2.82 7.74 -2.91 -0.02 2.80 15 9 C 0.26 11.05 3.07 29.10 0.09 11.14 15 10 H 0.06 2.78 8.00 -2.39 -0.02 2.76 15 11 O -0.57 -25.42 12.58 -148.98 -1.87 -27.30 15 12 C -0.02 -0.57 4.91 -19.87 -0.10 -0.67 15 13 C -0.11 -3.14 9.67 22.27 0.22 -2.92 15 14 C -0.03 -0.78 9.55 22.27 0.21 -0.56 15 15 C -0.08 -2.26 6.85 36.40 0.25 -2.01 15 16 N 0.04 1.11 4.45 -46.41 -0.21 0.91 15 17 O -0.17 -5.42 18.45 18.88 0.35 -5.07 15 18 O -0.17 -5.49 16.02 18.89 0.30 -5.19 15 19 C 0.02 0.46 6.32 22.32 0.14 0.60 15 20 Cl -0.01 -0.41 25.94 -2.72 -0.07 -0.48 15 21 C -0.11 -3.39 9.10 22.29 0.20 -3.19 15 22 H 0.27 13.61 8.31 -92.71 -0.77 12.84 15 23 H 0.36 13.75 7.49 -74.05 -0.55 13.20 15 24 H 0.17 4.08 8.04 -2.91 -0.02 4.06 15 25 H 0.18 3.65 7.61 -2.91 -0.02 3.63 15 26 H 0.16 4.64 6.78 -2.91 -0.02 4.62 15 Total: -1.00 -56.23 258.74 3.18 -53.05 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.69 Total: 12.66 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 1.69 Total: -22.59 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.07 Total: -46.44 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.22 Total: -37.55 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.36 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.07 Total: -0.48 kcal Total: -56.23 3.18 -53.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536199378.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.758 kcal (2) G-P(sol) polarization free energy of solvation -56.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds