Wall clock time and date at job start Mon Mar 30 2020 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36829 * 125.03142 * 2 1 4 4 H 0.97000 * 125.06546 * 0.04696 * 3 2 1 5 5 C 1.37689 * 109.87137 * 180.02562 * 3 2 1 6 6 C 1.39131 * 133.51077 * 180.02562 * 5 3 2 7 7 C 1.37747 * 119.78074 * 179.97438 * 6 5 3 8 8 C 1.38830 * 120.66518 * 0.25422 * 7 6 5 9 9 C 1.50696 * 119.73446 * 179.71973 * 8 7 6 10 10 C 1.52999 * 109.47434 * 299.99953 * 9 8 7 11 11 C 1.53001 * 109.47032 * 60.00035 * 9 8 7 12 12 C 1.36622 * 120.52728 * 359.46321 * 8 7 6 13 13 C 1.39628 * 119.76510 * 0.54679 * 12 8 7 14 14 C 1.34236 * 125.03420 * 180.02562 * 2 1 3 15 15 C 1.50701 * 126.50391 * 359.97438 * 14 2 1 16 16 C 1.50705 * 109.46891 * 89.97547 * 15 14 2 17 17 H 1.07998 * 120.00109 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99627 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99707 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00160 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47403 * 89.99481 * 20 18 16 22 22 H 1.48503 * 109.47253 * 209.99775 * 20 18 16 23 23 H 1.48507 * 109.47021 * 329.99449 * 20 18 16 24 24 H 1.09001 * 109.46859 * 89.97371 * 1 2 3 25 25 H 1.09000 * 109.47089 * 209.97368 * 1 2 3 26 26 H 1.09002 * 109.47409 * 329.97216 * 1 2 3 27 27 H 1.08006 * 120.10848 * 359.96984 * 6 5 3 28 28 H 1.08002 * 119.66366 * 179.97438 * 7 6 5 29 29 H 1.09005 * 109.47341 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.46919 * 300.00216 * 10 9 8 31 31 H 1.08997 * 109.46774 * 60.00159 * 10 9 8 32 32 H 1.08999 * 109.46981 * 179.97438 * 10 9 8 33 33 H 1.09002 * 109.47257 * 59.99966 * 11 9 8 34 34 H 1.08999 * 109.47471 * 179.97438 * 11 9 8 35 35 H 1.08997 * 109.47403 * 299.99980 * 11 9 8 36 36 H 1.08006 * 120.11930 * 180.28463 * 12 8 7 37 37 H 1.08998 * 109.46603 * 209.97628 * 15 14 2 38 38 H 1.08993 * 109.46728 * 329.97784 * 15 14 2 39 39 H 0.96996 * 120.00221 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9622 2.0325 0.0007 5 6 3.6214 0.7603 -0.0006 6 6 4.8099 1.4837 -0.0004 7 6 6.0159 0.8183 -0.0006 8 6 6.0589 -0.5694 -0.0063 9 6 7.3900 -1.2759 -0.0129 10 6 8.1752 -0.8729 -1.2626 11 6 8.1821 -0.8829 1.2358 12 6 4.9042 -1.2995 -0.0008 13 6 3.6705 -0.6455 -0.0009 14 6 2.2776 -1.0991 -0.0005 15 6 1.8004 -2.5286 -0.0006 16 6 1.6402 -3.0046 -1.4215 17 1 1.8623 -2.3387 -2.2423 18 6 1.2113 -4.2904 -1.6735 19 7 1.0710 -4.7057 -2.9135 20 14 0.8280 -5.4423 -0.2538 21 1 -0.6017 -5.3046 0.1233 22 1 1.0985 -6.8431 -0.6659 23 1 1.6826 -5.0950 0.9100 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3634 0.8897 0.5143 27 1 4.7869 2.5636 -0.0001 28 1 6.9373 1.3817 -0.0009 29 1 7.2292 -2.3540 -0.0163 30 1 7.6109 -1.1528 -2.1522 31 1 8.3361 0.2051 -1.2587 32 1 9.1382 -1.3836 -1.2670 33 1 7.6227 -1.1701 2.1262 34 1 9.1447 -1.3943 1.2314 35 1 8.3430 0.1951 1.2398 36 1 4.9454 -2.3788 -0.0007 37 1 2.5300 -3.1551 0.5125 38 1 0.8416 -2.5915 0.5139 39 1 0.7689 -5.6101 -3.0908 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082600370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:49 Heat of formation + Delta-G solvation = 10.011893 kcal Electronic energy + Delta-G solvation = -18724.628666 eV Core-core repulsion = 16016.582716 eV Total energy + Delta-G solvation = -2708.045950 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.15502 -39.00278 -35.64170 -35.15073 -33.56850 -31.61920 -30.95949 -29.10927 -27.89414 -27.25388 -24.56572 -23.67092 -22.57878 -20.73681 -19.64724 -18.92375 -18.44902 -16.80451 -16.46587 -16.26676 -15.59037 -15.19212 -14.98081 -14.71799 -14.43999 -14.25494 -14.05076 -13.88522 -13.60175 -13.53607 -13.11159 -12.98464 -12.91397 -12.51247 -12.28468 -12.23467 -11.92208 -11.80305 -11.66280 -11.56829 -11.56037 -11.32406 -10.74391 -10.27075 -8.82417 -8.31764 -8.23598 -6.28863 0.31442 0.77877 1.35047 1.38066 1.50453 1.88979 2.32672 2.37409 3.04194 3.07843 3.77563 3.95159 4.03355 4.18234 4.30214 4.42054 4.47590 4.53398 4.56529 4.66481 4.71412 4.76323 4.89211 4.99999 5.05204 5.06194 5.07734 5.15278 5.17635 5.22534 5.25891 5.42189 5.47518 5.48735 5.61804 5.68759 5.91127 5.96987 6.09182 6.34742 6.39300 6.75678 6.90301 7.33672 8.91121 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.006786 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.691562 B = 4125.198671 C = 5218.436817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.062 3.938 3 N -0.584 5.584 4 H 0.426 0.574 5 C 0.078 3.922 6 C -0.128 4.128 7 C -0.096 4.096 8 C -0.108 4.108 9 C -0.055 4.055 10 C -0.138 4.138 11 C -0.135 4.135 12 C -0.094 4.094 13 C -0.129 4.129 14 C -0.171 4.171 15 C 0.062 3.938 16 C -0.506 4.506 17 H 0.019 0.981 18 C 0.007 3.993 19 N -0.952 5.952 20 Si 0.947 3.053 21 H -0.258 1.258 22 H -0.283 1.283 23 H -0.253 1.253 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.012 0.988 38 H 0.031 0.969 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.360 13.496 9.671 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 N -0.190 5.190 4 H 0.266 0.734 5 C -0.030 4.030 6 C -0.148 4.148 7 C -0.115 4.115 8 C -0.109 4.109 9 C -0.074 4.074 10 C -0.195 4.195 11 C -0.192 4.192 12 C -0.113 4.113 13 C -0.134 4.134 14 C -0.178 4.178 15 C 0.024 3.976 16 C -0.544 4.544 17 H 0.038 0.962 18 C -0.189 4.189 19 N -0.593 5.593 20 Si 0.770 3.230 21 H -0.183 1.183 22 H -0.209 1.209 23 H -0.177 1.177 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.168 0.832 28 H 0.172 0.828 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.030 0.970 38 H 0.049 0.951 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.217 13.472 9.572 18.923 hybrid contribution -0.667 -0.788 -0.201 1.052 sum 8.550 12.684 9.370 17.938 Atomic orbital electron populations 1.20402 0.86115 1.04134 1.03087 1.20308 0.94441 0.85179 1.04574 1.41436 1.03186 1.08081 1.66261 0.73405 1.18485 0.85885 0.93399 1.05197 1.20308 0.88688 1.00048 1.05787 1.20862 0.97565 0.92981 1.00103 1.19509 0.94096 0.94367 1.02915 1.20101 0.91368 0.98645 0.97252 1.21812 0.99539 1.02396 0.95787 1.21790 0.99424 1.02380 0.95584 1.20277 0.91363 0.98832 1.00796 1.19453 0.93526 0.93550 1.06890 1.20471 0.91510 0.95467 1.10334 1.17872 0.95450 0.89333 0.94898 1.21160 1.43792 0.97584 0.91838 0.96239 1.25946 0.94930 0.99686 0.98367 1.70068 1.49173 1.18805 1.21278 0.85704 0.79926 0.77544 0.79818 1.18277 1.20891 1.17654 0.91263 0.90481 0.88532 0.83193 0.82810 0.92238 0.94492 0.91138 0.90986 0.93639 0.91126 0.91212 0.88670 0.96985 0.95116 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.45 10.18 71.24 0.72 -1.73 16 2 C 0.06 2.34 7.08 40.87 0.29 2.63 16 3 N -0.58 -18.35 6.07 -175.91 -1.07 -19.41 16 4 H 0.43 9.47 8.96 -92.71 -0.83 8.64 16 5 C 0.08 2.73 7.28 39.03 0.28 3.01 16 6 C -0.13 -3.52 10.08 22.37 0.23 -3.29 16 7 C -0.10 -2.54 8.67 22.30 0.19 -2.35 16 8 C -0.11 -3.39 4.75 -20.10 -0.10 -3.49 16 9 C -0.06 -1.40 3.08 -11.54 -0.04 -1.44 16 10 C -0.14 -3.01 9.00 71.98 0.65 -2.36 16 11 C -0.13 -2.64 9.00 71.98 0.65 -1.99 16 12 C -0.09 -3.83 9.66 22.23 0.21 -3.62 16 13 C -0.13 -5.60 6.35 -20.20 -0.13 -5.73 16 14 C -0.17 -7.94 5.50 -18.63 -0.10 -8.04 16 15 C 0.06 3.20 4.33 29.10 0.13 3.33 16 16 C -0.51 -30.84 9.65 25.60 0.25 -30.59 16 17 H 0.02 1.34 7.98 -2.91 -0.02 1.31 16 18 C 0.01 0.42 5.47 84.65 0.46 0.88 16 19 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 20 Si 0.95 45.56 27.47 68.60 1.88 47.44 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.08 2.47 7.04 -2.39 -0.02 2.45 16 26 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.15 2.88 7.05 -2.91 -0.02 2.86 16 29 H 0.06 1.67 7.84 -2.38 -0.02 1.65 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.29 7.36 -2.39 -0.02 1.27 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.15 7.36 -2.39 -0.02 1.14 16 36 H 0.10 4.16 7.91 -2.91 -0.02 4.14 16 37 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 38 H 0.03 1.48 6.48 -2.39 -0.02 1.46 16 39 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -75.20 318.74 4.97 -70.23 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.15 Total: 17.68 kcal Atomic # 6 Polarization: -58.48 SS G_CDS: 3.70 Total: -54.77 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -0.77 Total: -80.58 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -75.20 4.97 -70.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082600370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.240 kcal (2) G-P(sol) polarization free energy of solvation -75.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds