Wall clock time and date at job start Mon Mar 30 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48498 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46932 * 300.00045 * 3 2 1 6 6 H 1.48501 * 109.46941 * 59.99772 * 3 2 1 7 7 C 1.37877 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00104 * 158.99204 * 7 2 1 9 9 C 1.50704 * 120.00058 * 338.99113 * 7 2 1 10 10 C 1.53001 * 115.54891 * 325.83082 * 9 7 2 11 11 N 1.46905 * 109.46917 * 306.25298 * 10 9 7 12 12 C 1.46900 * 110.99827 * 174.28191 * 11 10 9 13 13 H 1.08994 * 115.56171 * 345.77651 * 12 11 10 14 14 C 1.52999 * 117.49377 * 131.46358 * 12 11 10 15 15 C 1.52995 * 60.00082 * 107.48636 * 14 12 11 16 16 H 1.09008 * 117.49929 * 107.50704 * 15 14 12 17 17 C 1.50695 * 117.50151 * 252.50471 * 15 14 12 18 18 C 1.38241 * 119.99640 * 26.78150 * 17 15 14 19 19 C 1.38235 * 119.99670 * 179.78536 * 18 17 15 20 20 C 1.38235 * 120.00339 * 0.44344 * 19 18 17 21 21 C 1.38242 * 119.99617 * 359.80990 * 20 19 18 22 22 C 1.38228 * 120.00232 * 359.97438 * 21 20 19 23 23 C 1.52997 * 117.49535 * 111.49474 * 9 7 2 24 24 C 1.52996 * 117.49823 * 180.15717 * 9 7 2 25 25 H 0.96998 * 120.00053 * 5.06175 * 1 2 3 26 26 H 1.08996 * 109.46665 * 186.26136 * 10 9 7 27 27 H 1.08995 * 109.47521 * 66.25486 * 10 9 7 28 28 H 1.00897 * 110.99579 * 50.33003 * 11 10 9 29 29 H 1.08999 * 117.50320 * 359.97438 * 14 12 11 30 30 H 1.09004 * 117.49965 * 214.97552 * 14 12 11 31 31 H 1.07991 * 120.00116 * 0.02562 * 18 17 15 32 32 H 1.07994 * 119.99952 * 180.27547 * 19 18 17 33 33 H 1.07992 * 120.00351 * 179.83066 * 20 19 18 34 34 H 1.07998 * 119.99558 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.99979 * 180.02562 * 22 21 20 36 36 H 1.09004 * 117.49917 * 214.99827 * 23 9 7 37 37 H 1.08996 * 117.50196 * 0.02609 * 23 9 7 38 38 H 1.09000 * 117.49960 * 359.97438 * 24 9 7 39 39 H 1.08999 * 117.50094 * 144.97775 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0307 -1.2253 -0.3348 9 6 1.3262 -2.4556 0.4690 10 6 0.3136 -2.2786 1.6023 11 7 0.9512 -1.5747 2.7231 12 6 -0.0262 -1.2664 3.7755 13 1 -1.0730 -1.3682 3.4895 14 6 0.3506 -1.6211 5.2153 15 6 0.3306 -0.1581 4.7681 16 1 -0.4815 0.4694 5.1355 17 6 1.6576 0.5337 4.5913 18 6 2.7854 -0.2033 4.2814 19 6 4.0019 0.4319 4.1149 20 6 4.0924 1.8028 4.2673 21 6 2.9656 2.5391 4.5824 22 6 1.7483 1.9046 4.7445 23 6 1.0325 -3.5307 -0.5792 24 6 2.1456 -3.7475 0.4491 25 1 -0.4850 0.8367 -0.0741 26 1 -0.0318 -3.2567 1.9369 27 1 -0.5353 -1.6966 1.2435 28 1 1.4175 -0.7379 2.4062 29 1 1.3235 -2.0836 5.3816 30 1 -0.4484 -1.9562 5.8767 31 1 2.7153 -1.2747 4.1656 32 1 4.8820 -0.1433 3.8684 33 1 5.0433 2.2987 4.1399 34 1 3.0365 3.6101 4.7019 35 1 0.8680 2.4799 4.9903 36 1 0.1180 -4.1121 -0.4613 37 1 1.3303 -3.3258 -1.6075 38 1 3.1752 -3.6851 0.0968 39 1 1.9636 -4.4712 1.2436 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:14 Heat of formation + Delta-G solvation = 76.991004 kcal Electronic energy + Delta-G solvation = -19488.770437 eV Core-core repulsion = 16783.628920 eV Total energy + Delta-G solvation = -2705.141518 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.36334 -37.21313 -36.19728 -32.35284 -31.71182 -30.46695 -29.89070 -25.66576 -24.25034 -23.33167 -22.15270 -21.09118 -20.53782 -19.65022 -18.94620 -16.53236 -16.26419 -15.35254 -14.90158 -14.67174 -14.20858 -13.95788 -13.59246 -13.38929 -12.92962 -12.68454 -12.42048 -12.26551 -11.63708 -11.58497 -11.16529 -10.98086 -10.91453 -10.68392 -10.55470 -10.38758 -10.21227 -10.15890 -9.86020 -9.23383 -9.14197 -8.63499 -8.45964 -8.13068 -8.01892 -7.24669 -6.10098 -4.05996 1.73294 1.84618 3.25020 3.37271 3.41344 4.03495 4.35784 4.58286 4.81436 4.97418 5.10079 5.25614 5.35160 5.44120 5.55549 5.57188 5.61791 5.92869 5.96373 6.02489 6.11635 6.18972 6.19807 6.40017 6.46202 6.51784 6.52740 6.71298 6.80752 6.85433 6.87508 6.97510 7.00585 7.11150 7.17427 7.41348 7.44040 7.53583 7.90403 8.18968 8.44569 8.54008 8.88819 9.48001 10.89578 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.009750 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.305812 B = 2871.155183 C = 3645.027309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.075 3.925 3 Si 0.869 3.131 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.488 4.488 8 H 0.061 0.939 9 C 0.057 3.943 10 C 0.101 3.899 11 N -0.647 5.647 12 C 0.045 3.955 13 H 0.092 0.908 14 C -0.169 4.169 15 C -0.137 4.137 16 H 0.103 0.897 17 C -0.046 4.046 18 C -0.099 4.099 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.205 4.205 24 C -0.204 4.204 25 H 0.261 0.739 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.360 0.640 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 1.517 9.724 10.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.128 4.128 3 Si 0.695 3.305 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.526 4.526 8 H 0.079 0.921 9 C 0.056 3.944 10 C -0.028 4.028 11 N -0.282 5.282 12 C -0.067 4.067 13 H 0.110 0.890 14 C -0.207 4.207 15 C -0.156 4.156 16 H 0.121 0.879 17 C -0.047 4.047 18 C -0.117 4.117 19 C -0.136 4.136 20 C -0.150 4.150 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.244 4.244 24 C -0.241 4.241 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.185 0.815 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.161 0.839 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.889 1.092 10.060 10.294 hybrid contribution -0.101 1.690 -0.629 1.806 sum 1.788 2.782 9.431 9.994 Atomic orbital electron populations 1.70004 1.06009 1.26678 1.47969 1.24903 0.94550 0.98833 0.94537 0.86864 0.81192 0.84361 0.78040 1.19292 1.21267 1.19948 1.20496 0.98143 0.90375 1.43542 0.92107 1.18915 0.94719 0.87936 0.92808 1.21437 0.97313 0.95507 0.88534 1.60505 1.26394 1.29635 1.11647 1.22474 0.95956 0.98792 0.89446 0.89048 1.23264 1.03109 0.95665 0.98668 1.21368 0.95938 0.91204 1.07120 0.87885 1.19090 0.93529 0.93103 0.98932 1.21383 0.91553 1.01585 0.97178 1.21150 0.98035 0.94544 0.99858 1.21073 0.98229 0.94527 1.01158 1.20980 0.93070 0.99254 1.01237 1.20889 0.97409 0.94056 1.01410 1.22941 0.97822 1.07697 0.95944 1.22846 0.95554 1.03925 1.01825 0.92920 0.95036 0.91257 0.81483 0.88334 0.89283 0.83948 0.86216 0.86751 0.86785 0.86801 0.91959 0.90609 0.91036 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.58 11.23 55.43 0.62 -22.96 16 2 C 0.08 2.00 4.03 -17.82 -0.07 1.93 16 3 Si 0.87 20.91 29.59 -169.99 -5.03 15.88 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.49 -13.06 8.26 -34.44 -0.28 -13.34 16 8 H 0.06 1.67 7.90 -52.49 -0.41 1.25 16 9 C 0.06 1.40 2.06 -155.66 -0.32 1.07 16 10 C 0.10 2.33 4.86 -3.82 -0.02 2.31 16 11 N -0.65 -13.76 4.96 -106.73 -0.53 -14.29 16 12 C 0.05 0.83 6.16 -67.71 -0.42 0.41 16 13 H 0.09 1.67 7.90 -51.93 -0.41 1.26 16 14 C -0.17 -2.56 9.75 -26.73 -0.26 -2.82 16 15 C -0.14 -2.26 6.04 -91.78 -0.55 -2.81 16 16 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 17 C -0.05 -0.81 5.17 -104.62 -0.54 -1.36 16 18 C -0.10 -1.77 7.34 -39.58 -0.29 -2.06 16 19 C -0.12 -1.97 10.05 -39.58 -0.40 -2.36 16 20 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 21 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 22 C -0.12 -1.98 9.74 -39.58 -0.39 -2.37 16 23 C -0.21 -4.73 9.96 -26.69 -0.27 -4.99 16 24 C -0.20 -4.52 9.92 -26.69 -0.26 -4.78 16 25 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 26 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.07 1.76 6.21 -51.93 -0.32 1.44 16 28 H 0.36 8.45 4.85 -39.29 -0.19 8.26 16 29 H 0.10 1.52 6.90 -51.93 -0.36 1.16 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.14 2.60 5.61 -52.49 -0.29 2.30 16 32 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -27.24 317.39 -10.80 -38.04 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -5.77 Total: 14.58 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: -4.87 Total: -36.03 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.09 Total: -37.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.24 -10.80 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.032 kcal (2) G-P(sol) polarization free energy of solvation -27.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds