Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48498 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46932 * 300.00045 * 3 2 1 6 6 H 1.48501 * 109.46941 * 59.99772 * 3 2 1 7 7 C 1.37877 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00104 * 158.99204 * 7 2 1 9 9 C 1.50704 * 120.00058 * 338.99113 * 7 2 1 10 10 C 1.53001 * 115.54891 * 325.83082 * 9 7 2 11 11 N 1.46905 * 109.46917 * 306.25298 * 10 9 7 12 12 C 1.46900 * 110.99827 * 174.28191 * 11 10 9 13 13 H 1.08994 * 115.56171 * 345.77651 * 12 11 10 14 14 C 1.52999 * 117.49377 * 131.46358 * 12 11 10 15 15 C 1.52995 * 60.00082 * 107.48636 * 14 12 11 16 16 H 1.09008 * 117.49929 * 107.50704 * 15 14 12 17 17 C 1.50695 * 117.50151 * 252.50471 * 15 14 12 18 18 C 1.38241 * 119.99640 * 26.78150 * 17 15 14 19 19 C 1.38235 * 119.99670 * 179.78536 * 18 17 15 20 20 C 1.38235 * 120.00339 * 0.44344 * 19 18 17 21 21 C 1.38242 * 119.99617 * 359.80990 * 20 19 18 22 22 C 1.38228 * 120.00232 * 359.97438 * 21 20 19 23 23 C 1.52997 * 117.49535 * 111.49474 * 9 7 2 24 24 C 1.52996 * 117.49823 * 180.15717 * 9 7 2 25 25 H 0.96998 * 120.00053 * 5.06175 * 1 2 3 26 26 H 1.08996 * 109.46665 * 186.26136 * 10 9 7 27 27 H 1.08995 * 109.47521 * 66.25486 * 10 9 7 28 28 H 1.00897 * 110.99579 * 50.33003 * 11 10 9 29 29 H 1.08999 * 117.50320 * 359.97438 * 14 12 11 30 30 H 1.09004 * 117.49965 * 214.97552 * 14 12 11 31 31 H 1.07991 * 120.00116 * 0.02562 * 18 17 15 32 32 H 1.07994 * 119.99952 * 180.27547 * 19 18 17 33 33 H 1.07992 * 120.00351 * 179.83066 * 20 19 18 34 34 H 1.07998 * 119.99558 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.99979 * 180.02562 * 22 21 20 36 36 H 1.09004 * 117.49917 * 214.99827 * 23 9 7 37 37 H 1.08996 * 117.50196 * 0.02609 * 23 9 7 38 38 H 1.09000 * 117.49960 * 359.97438 * 24 9 7 39 39 H 1.08999 * 117.50094 * 144.97775 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0307 -1.2253 -0.3348 9 6 1.3262 -2.4556 0.4690 10 6 0.3136 -2.2786 1.6023 11 7 0.9512 -1.5747 2.7231 12 6 -0.0262 -1.2664 3.7755 13 1 -1.0730 -1.3682 3.4895 14 6 0.3506 -1.6211 5.2153 15 6 0.3306 -0.1581 4.7681 16 1 -0.4815 0.4694 5.1355 17 6 1.6576 0.5337 4.5913 18 6 2.7854 -0.2033 4.2814 19 6 4.0019 0.4319 4.1149 20 6 4.0924 1.8028 4.2673 21 6 2.9656 2.5391 4.5824 22 6 1.7483 1.9046 4.7445 23 6 1.0325 -3.5307 -0.5792 24 6 2.1456 -3.7475 0.4491 25 1 -0.4850 0.8367 -0.0741 26 1 -0.0318 -3.2567 1.9369 27 1 -0.5353 -1.6966 1.2435 28 1 1.4175 -0.7379 2.4062 29 1 1.3235 -2.0836 5.3816 30 1 -0.4484 -1.9562 5.8767 31 1 2.7153 -1.2747 4.1656 32 1 4.8820 -0.1433 3.8684 33 1 5.0433 2.2987 4.1399 34 1 3.0365 3.6101 4.7019 35 1 0.8680 2.4799 4.9903 36 1 0.1180 -4.1121 -0.4613 37 1 1.3303 -3.3258 -1.6075 38 1 3.1752 -3.6851 0.0968 39 1 1.9636 -4.4712 1.2436 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = 65.029948 kcal Electronic energy + Delta-G solvation = -19489.289107 eV Core-core repulsion = 16783.628920 eV Total energy + Delta-G solvation = -2705.660188 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65300 -38.83283 -37.71780 -34.29246 -33.37211 -31.71951 -31.16642 -27.67339 -25.98752 -24.58566 -23.41051 -22.88771 -21.88185 -21.07581 -20.76313 -18.18234 -17.79465 -16.72587 -16.61466 -16.33882 -15.66474 -15.51655 -15.23428 -14.82525 -14.41236 -14.15394 -13.86193 -13.76303 -13.33624 -13.09933 -12.86707 -12.83367 -12.59258 -12.28139 -12.12649 -11.96084 -11.79600 -11.52254 -11.27973 -11.17192 -11.00033 -10.50939 -9.98972 -9.71747 -9.36638 -8.88798 -8.11426 -6.12997 0.47489 0.58683 1.31325 1.41139 1.47523 2.37312 2.76358 2.94174 3.24202 3.43555 3.74156 3.81742 4.03780 4.12337 4.23100 4.30714 4.36442 4.38045 4.50679 4.65409 4.68023 4.77150 4.83716 4.88998 4.95018 5.01375 5.05691 5.14334 5.20516 5.27432 5.29770 5.37287 5.56746 5.61808 5.62720 5.71139 5.83810 5.90090 6.20349 6.44122 6.54336 6.73486 6.89327 7.42314 8.85676 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.009750 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.305812 B = 2871.155183 C = 3645.027309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.049 3.951 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.502 4.502 8 H 0.046 0.954 9 C 0.028 3.972 10 C 0.113 3.887 11 N -0.644 5.644 12 C 0.014 3.986 13 H 0.087 0.913 14 C -0.141 4.141 15 C -0.134 4.134 16 H 0.120 0.880 17 C -0.065 4.065 18 C -0.115 4.115 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.133 4.133 23 C -0.206 4.206 24 C -0.185 4.185 25 H 0.260 0.740 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.346 0.654 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 2.005 10.958 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.153 4.153 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.017 4.017 11 N -0.277 5.277 12 C -0.098 4.098 13 H 0.105 0.895 14 C -0.179 4.179 15 C -0.153 4.153 16 H 0.138 0.862 17 C -0.066 4.066 18 C -0.133 4.133 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.244 4.244 24 C -0.222 4.222 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.168 0.832 29 H 0.114 0.886 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.209 1.565 11.303 11.623 hybrid contribution -0.178 1.533 -1.014 1.847 sum 2.030 3.098 10.290 10.936 Atomic orbital electron populations 1.70087 1.06751 1.26999 1.48628 1.25297 0.94998 1.00667 0.94360 0.86157 0.80195 0.81815 0.77785 1.19349 1.21236 1.19881 1.20612 0.97574 0.91887 1.43904 0.93617 1.19062 0.96187 0.88022 0.94003 1.21219 0.95996 0.95625 0.88819 1.60524 1.27024 1.28910 1.11235 1.22554 0.95205 1.01997 0.90018 0.89499 1.23297 1.03740 0.94653 0.96250 1.21477 0.96077 0.91850 1.05852 0.86176 1.19310 0.93823 0.93848 0.99590 1.21388 0.92404 1.01223 0.98237 1.21424 0.98193 0.95480 1.00030 1.21442 0.99563 0.94231 1.00319 1.21383 0.92687 1.00767 1.00296 1.21212 0.98618 0.93918 1.01360 1.22932 0.98867 1.07235 0.95381 1.22830 0.95201 1.02580 1.01582 0.93001 0.94112 0.94083 0.83157 0.88623 0.86390 0.85091 0.85047 0.84164 0.84092 0.85141 0.90564 0.91549 0.91011 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.50 11.23 21.45 0.24 -48.26 16 2 C 0.05 2.60 4.03 84.65 0.34 2.94 16 3 Si 0.91 42.95 29.59 68.60 2.03 44.98 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.50 -27.08 8.26 25.60 0.21 -26.87 16 8 H 0.05 2.54 7.90 -2.91 -0.02 2.51 16 9 C 0.03 1.37 2.06 -52.93 -0.11 1.26 16 10 C 0.11 5.21 4.86 86.30 0.42 5.63 16 11 N -0.64 -27.37 4.96 -491.58 -2.44 -29.80 16 12 C 0.01 0.49 6.16 44.91 0.28 0.76 16 13 H 0.09 3.16 7.90 -2.39 -0.02 3.14 16 14 C -0.14 -4.03 9.75 30.59 0.30 -3.73 16 15 C -0.13 -4.21 6.04 -11.54 -0.07 -4.28 16 16 H 0.12 3.31 8.14 -2.38 -0.02 3.29 16 17 C -0.07 -2.23 5.17 -19.87 -0.10 -2.34 16 18 C -0.11 -4.03 7.34 22.27 0.16 -3.86 16 19 C -0.13 -4.32 10.05 22.27 0.22 -4.09 16 20 C -0.14 -4.05 10.05 22.27 0.22 -3.83 16 21 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 22 C -0.13 -4.18 9.74 22.27 0.22 -3.96 16 23 C -0.21 -9.34 9.96 30.62 0.30 -9.04 16 24 C -0.18 -7.98 9.92 30.62 0.30 -7.67 16 25 H 0.26 13.73 8.32 -92.71 -0.77 12.96 16 26 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 27 H 0.04 2.13 6.21 -2.39 -0.01 2.11 16 28 H 0.35 16.33 4.85 -89.70 -0.43 15.90 16 29 H 0.10 2.81 6.90 -2.39 -0.02 2.79 16 30 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.13 4.80 5.61 -2.92 -0.02 4.78 16 32 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 35 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -57.38 317.39 3.36 -54.02 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: 0.60 Total: 41.79 kcal Atomic # 6 Polarization: -65.65 SS G_CDS: 2.93 Total: -62.72 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -2.20 Total: -78.06 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -57.38 3.36 -54.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.050 kcal (2) G-P(sol) polarization free energy of solvation -57.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds