Wall clock time and date at job start Mon Mar 30 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34957 * 125.97287 * 2 1 4 4 C 1.35255 * 107.86451 * 180.02562 * 3 2 1 5 5 C 1.40428 * 107.85924 * 359.97438 * 4 3 2 6 6 N 1.39994 * 125.97494 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99888 * 0.02562 * 6 5 4 8 8 H 1.08997 * 109.47071 * 34.99675 * 7 6 5 9 9 C 1.50704 * 109.47129 * 275.00183 * 7 6 5 10 10 H 1.08002 * 119.99945 * 328.49580 * 9 7 6 11 11 C 1.37875 * 119.99922 * 148.50353 * 9 7 6 12 12 N 1.31509 * 120.00475 * 1.34220 * 11 9 7 13 13 Si 1.86802 * 119.99602 * 181.34924 * 11 9 7 14 14 H 1.48502 * 109.47241 * 269.99358 * 13 11 9 15 15 H 1.48499 * 109.47337 * 29.99671 * 13 11 9 16 16 H 1.48503 * 109.47138 * 149.99417 * 13 11 9 17 17 C 1.50695 * 109.47193 * 154.99691 * 7 6 5 18 18 C 1.38237 * 119.99775 * 46.76322 * 17 7 6 19 19 C 1.38235 * 120.00016 * 179.80708 * 18 17 7 20 20 C 1.38238 * 119.99813 * 0.40173 * 19 18 17 21 21 C 1.38235 * 120.00176 * 359.84920 * 20 19 18 22 22 C 1.38236 * 120.00018 * 227.03658 * 17 7 6 23 23 N 1.31227 * 108.04950 * 0.24421 * 5 4 3 24 24 H 1.09002 * 109.46626 * 90.00287 * 1 2 3 25 25 H 1.09003 * 109.47590 * 210.00251 * 1 2 3 26 26 H 1.08993 * 109.47318 * 330.00494 * 1 2 3 27 27 H 1.08003 * 126.07015 * 0.02562 * 3 2 1 28 28 H 1.07990 * 126.07051 * 179.97438 * 4 3 2 29 29 H 0.97001 * 120.00128 * 180.02562 * 6 5 4 30 30 H 0.97002 * 119.99528 * 357.06854 * 12 11 9 31 31 H 1.08003 * 120.00067 * 359.97438 * 18 17 7 32 32 H 1.07994 * 120.00348 * 180.22748 * 19 18 17 33 33 H 1.08002 * 120.00019 * 179.83163 * 20 19 18 34 34 H 1.07994 * 120.00119 * 179.97438 * 21 20 19 35 35 H 1.07990 * 120.00077 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2577 1.0922 0.0000 4 6 3.5433 0.6718 -0.0006 5 6 3.5372 -0.7325 -0.0003 6 7 4.6665 -1.5597 -0.0013 7 6 6.0071 -0.9691 -0.0021 8 1 6.0006 -0.0524 0.5875 9 6 6.4159 -0.6529 -1.4177 10 1 6.0611 -1.2671 -2.2322 11 6 7.2430 0.4203 -1.6731 12 7 7.6965 1.1522 -0.6790 13 14 7.7192 0.8348 -3.4312 14 1 8.9633 0.1084 -3.7914 15 1 6.6252 0.4283 -4.3494 16 1 7.9477 2.2973 -3.5504 17 6 6.9864 -1.9450 0.5976 18 6 6.9760 -3.2683 0.1978 19 6 7.8769 -4.1627 0.7449 20 6 8.7827 -3.7356 1.6979 21 6 8.7896 -2.4135 2.1014 22 6 7.8913 -1.5182 1.5515 23 7 2.2877 -1.1336 -0.0050 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.9247 2.1196 0.0004 28 1 4.4189 1.3038 -0.0011 29 1 4.5614 -2.5240 -0.0014 30 1 7.4153 0.9632 0.2299 31 1 6.2658 -3.6028 -0.5439 32 1 7.8712 -5.1957 0.4300 33 1 9.4847 -4.4350 2.1273 34 1 9.4970 -2.0799 2.8462 35 1 7.8967 -0.4853 1.8667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094196953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:39 Heat of formation + Delta-G solvation = 110.128982 kcal Electronic energy + Delta-G solvation = -18480.700536 eV Core-core repulsion = 15673.455645 eV Total energy + Delta-G solvation = -2807.244890 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28983 -38.62388 -35.49324 -33.06951 -31.60243 -30.22060 -29.96055 -29.15693 -26.19109 -25.13836 -23.16263 -21.85324 -20.87313 -20.08534 -19.32846 -17.01932 -16.59993 -16.27743 -15.05219 -14.88580 -14.56963 -14.26092 -13.80712 -13.29750 -13.27490 -13.07672 -12.68373 -12.35894 -12.30622 -12.02768 -11.97758 -11.75936 -10.87437 -10.77657 -10.43470 -10.22436 -10.06702 -9.94142 -9.71244 -8.92679 -8.55161 -8.22736 -8.02562 -7.80676 -6.78875 -6.35648 -4.19469 2.10225 2.12555 2.60728 3.08217 3.40762 3.44039 3.59444 3.89792 4.39559 4.44572 4.69818 5.04856 5.25019 5.34363 5.38513 5.52984 5.56321 5.57585 5.69227 5.98424 6.13741 6.22706 6.29209 6.51332 6.57445 6.60020 6.73845 6.88218 7.12457 7.13762 7.21683 7.50422 7.70873 7.73014 7.93969 8.01318 8.32912 8.61476 8.71409 9.01118 9.49056 10.88733 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.007835 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.678774 B = 3572.822991 C = 4863.620874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.396 5.396 3 C 0.058 3.942 4 C -0.281 4.281 5 C 0.363 3.637 6 N -0.705 5.705 7 C 0.300 3.700 8 H 0.052 0.948 9 C -0.588 4.588 10 H 0.056 0.944 11 C 0.029 3.971 12 N -0.899 5.899 13 Si 1.069 2.931 14 H -0.287 1.287 15 H -0.288 1.288 16 H -0.283 1.283 17 C -0.041 4.041 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.149 4.149 21 C -0.121 4.121 22 C -0.117 4.117 23 N -0.383 5.383 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.163 0.837 28 H 0.145 0.855 29 H 0.385 0.615 30 H 0.270 0.730 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 -2.557 3.469 7.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.180 5.180 3 C -0.087 4.087 4 C -0.314 4.314 5 C 0.104 3.896 6 N -0.343 5.343 7 C 0.197 3.803 8 H 0.070 0.930 9 C -0.627 4.627 10 H 0.074 0.926 11 C -0.177 4.177 12 N -0.535 5.535 13 Si 0.897 3.103 14 H -0.214 1.214 15 H -0.214 1.214 16 H -0.208 1.208 17 C -0.043 4.043 18 C -0.136 4.136 19 C -0.143 4.143 20 C -0.167 4.167 21 C -0.139 4.139 22 C -0.135 4.135 23 N -0.218 5.218 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.181 0.819 28 H 0.163 0.837 29 H 0.218 0.782 30 H 0.082 0.918 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.462 -2.308 2.554 7.322 hybrid contribution -0.289 -0.669 0.707 1.015 sum -6.751 -2.977 3.261 8.066 Atomic orbital electron populations 1.21535 0.75633 1.03243 1.02143 1.47766 1.05260 1.03390 1.61579 1.22230 0.90976 0.92931 1.02596 1.21193 0.96857 0.93952 1.19390 1.19282 0.87079 0.90366 0.92836 1.44447 1.01743 1.05895 1.82209 1.17739 0.76094 0.90139 0.96327 0.93001 1.22237 1.33460 1.15423 0.91572 0.92583 1.25799 0.93495 0.92671 1.05719 1.70822 1.41137 1.40667 1.00846 0.83540 0.76136 0.76529 0.74126 1.21390 1.21412 1.20842 1.20668 0.97547 0.94258 0.91782 1.20843 0.99395 0.93428 0.99920 1.20982 0.96541 0.98929 0.97885 1.20867 1.00203 0.95912 0.99749 1.20988 0.98913 0.93708 1.00318 1.20976 0.96409 0.99298 0.96862 1.77335 0.99684 1.06410 1.38398 0.92027 0.90266 0.90509 0.81927 0.83704 0.78152 0.91817 0.86924 0.87209 0.87321 0.87101 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.34 11.47 59.85 0.69 2.02 16 2 N -0.40 -6.88 4.01 -68.18 -0.27 -7.16 16 3 C 0.06 0.99 11.48 -17.24 -0.20 0.79 16 4 C -0.28 -5.97 9.92 -39.82 -0.40 -6.36 16 5 C 0.36 8.15 8.14 -154.54 -1.26 6.89 16 6 N -0.70 -15.79 5.22 -55.84 -0.29 -16.08 16 7 C 0.30 7.16 2.01 -70.24 -0.14 7.02 16 8 H 0.05 1.33 5.24 -51.93 -0.27 1.06 16 9 C -0.59 -15.62 8.51 -34.44 -0.29 -15.91 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.03 0.79 5.46 -17.82 -0.10 0.70 16 12 N -0.90 -25.09 13.63 55.43 0.76 -24.34 16 13 Si 1.07 24.69 29.90 -169.99 -5.08 19.61 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.04 -0.91 4.93 -104.63 -0.52 -1.42 16 18 C -0.12 -2.36 8.91 -39.58 -0.35 -2.71 16 19 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 20 C -0.15 -2.53 10.05 -39.58 -0.40 -2.93 16 21 C -0.12 -2.20 10.05 -39.58 -0.40 -2.59 16 22 C -0.12 -2.44 9.54 -39.58 -0.38 -2.82 16 23 N -0.38 -8.12 12.59 31.41 0.40 -7.72 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.16 2.08 8.06 -52.48 -0.42 1.65 16 28 H 0.15 3.28 7.45 -52.49 -0.39 2.89 16 29 H 0.38 8.10 7.41 -40.82 -0.30 7.80 16 30 H 0.27 7.38 5.83 -40.82 -0.24 7.15 16 31 H 0.11 2.18 7.35 -52.48 -0.39 1.80 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 34 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.12 2.43 7.40 -52.49 -0.39 2.05 16 LS Contribution 302.31 15.07 4.56 4.56 Total: -1.00 -31.16 302.31 -8.22 -39.37 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -4.14 Total: 11.69 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -4.13 Total: -19.93 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.59 Total: -55.30 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.16 -8.22 -39.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094196953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.504 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds