Wall clock time and date at job start Mon Mar 30 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34957 * 125.97287 * 2 1 4 4 C 1.35255 * 107.86451 * 180.02562 * 3 2 1 5 5 C 1.40428 * 107.85924 * 359.97438 * 4 3 2 6 6 N 1.39994 * 125.97494 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99888 * 0.02562 * 6 5 4 8 8 H 1.08997 * 109.47071 * 34.99675 * 7 6 5 9 9 C 1.50704 * 109.47129 * 275.00183 * 7 6 5 10 10 H 1.08002 * 119.99945 * 328.49580 * 9 7 6 11 11 C 1.37875 * 119.99922 * 148.50353 * 9 7 6 12 12 N 1.31509 * 120.00475 * 1.34220 * 11 9 7 13 13 Si 1.86802 * 119.99602 * 181.34924 * 11 9 7 14 14 H 1.48502 * 109.47241 * 269.99358 * 13 11 9 15 15 H 1.48499 * 109.47337 * 29.99671 * 13 11 9 16 16 H 1.48503 * 109.47138 * 149.99417 * 13 11 9 17 17 C 1.50695 * 109.47193 * 154.99691 * 7 6 5 18 18 C 1.38237 * 119.99775 * 46.76322 * 17 7 6 19 19 C 1.38235 * 120.00016 * 179.80708 * 18 17 7 20 20 C 1.38238 * 119.99813 * 0.40173 * 19 18 17 21 21 C 1.38235 * 120.00176 * 359.84920 * 20 19 18 22 22 C 1.38236 * 120.00018 * 227.03658 * 17 7 6 23 23 N 1.31227 * 108.04950 * 0.24421 * 5 4 3 24 24 H 1.09002 * 109.46626 * 90.00287 * 1 2 3 25 25 H 1.09003 * 109.47590 * 210.00251 * 1 2 3 26 26 H 1.08993 * 109.47318 * 330.00494 * 1 2 3 27 27 H 1.08003 * 126.07015 * 0.02562 * 3 2 1 28 28 H 1.07990 * 126.07051 * 179.97438 * 4 3 2 29 29 H 0.97001 * 120.00128 * 180.02562 * 6 5 4 30 30 H 0.97002 * 119.99528 * 357.06854 * 12 11 9 31 31 H 1.08003 * 120.00067 * 359.97438 * 18 17 7 32 32 H 1.07994 * 120.00348 * 180.22748 * 19 18 17 33 33 H 1.08002 * 120.00019 * 179.83163 * 20 19 18 34 34 H 1.07994 * 120.00119 * 179.97438 * 21 20 19 35 35 H 1.07990 * 120.00077 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2577 1.0922 0.0000 4 6 3.5433 0.6718 -0.0006 5 6 3.5372 -0.7325 -0.0003 6 7 4.6665 -1.5597 -0.0013 7 6 6.0071 -0.9691 -0.0021 8 1 6.0006 -0.0524 0.5875 9 6 6.4159 -0.6529 -1.4177 10 1 6.0611 -1.2671 -2.2322 11 6 7.2430 0.4203 -1.6731 12 7 7.6965 1.1522 -0.6790 13 14 7.7192 0.8348 -3.4312 14 1 8.9633 0.1084 -3.7914 15 1 6.6252 0.4283 -4.3494 16 1 7.9477 2.2973 -3.5504 17 6 6.9864 -1.9450 0.5976 18 6 6.9760 -3.2683 0.1978 19 6 7.8769 -4.1627 0.7449 20 6 8.7827 -3.7356 1.6979 21 6 8.7896 -2.4135 2.1014 22 6 7.8913 -1.5182 1.5515 23 7 2.2877 -1.1336 -0.0050 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.9247 2.1196 0.0004 28 1 4.4189 1.3038 -0.0011 29 1 4.5614 -2.5240 -0.0014 30 1 7.4153 0.9632 0.2299 31 1 6.2658 -3.6028 -0.5439 32 1 7.8712 -5.1957 0.4300 33 1 9.4847 -4.4350 2.1273 34 1 9.4970 -2.0799 2.8462 35 1 7.8967 -0.4853 1.8667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094196953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:39 Heat of formation + Delta-G solvation = 91.795457 kcal Electronic energy + Delta-G solvation = -18481.495537 eV Core-core repulsion = 15673.455645 eV Total energy + Delta-G solvation = -2808.039892 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.80804 -40.17241 -37.17753 -34.82086 -33.19152 -31.72524 -31.42742 -30.70028 -27.92335 -26.58022 -24.98794 -23.35711 -22.39972 -21.57987 -20.98470 -18.92600 -18.14501 -17.73630 -16.54720 -16.32886 -16.10202 -15.76110 -15.67810 -14.98119 -14.89241 -14.50789 -14.14732 -13.79723 -13.71403 -13.54377 -13.37725 -13.13271 -12.71264 -12.52127 -12.00189 -11.93603 -11.73603 -11.63686 -11.33517 -10.67444 -10.57295 -9.72158 -9.57882 -9.41398 -8.70473 -8.21524 -6.30739 0.59860 0.61822 1.14837 1.51108 1.58949 1.74563 1.77472 2.22265 2.54560 2.84357 3.12823 3.23517 3.95947 4.09515 4.15088 4.20493 4.28746 4.38477 4.53865 4.63267 4.73138 4.75684 4.79255 4.91300 4.99141 5.02689 5.22016 5.27458 5.50793 5.67077 5.69368 5.85221 5.99881 6.08965 6.24746 6.38065 6.46229 6.62764 6.91197 7.33761 7.45572 8.77652 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.007835 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.678774 B = 3572.822991 C = 4863.620874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.387 5.387 3 C 0.090 3.910 4 C -0.332 4.332 5 C 0.337 3.663 6 N -0.709 5.709 7 C 0.314 3.686 8 H 0.022 0.978 9 C -0.594 4.594 10 H 0.037 0.963 11 C -0.013 4.013 12 N -0.921 5.921 13 Si 1.108 2.892 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.279 1.279 17 C -0.070 4.070 18 C -0.132 4.132 19 C -0.120 4.120 20 C -0.138 4.138 21 C -0.121 4.121 22 C -0.140 4.140 23 N -0.406 5.406 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.215 0.785 28 H 0.116 0.884 29 H 0.388 0.612 30 H 0.262 0.738 31 H 0.110 0.890 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.140 0.860 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 -3.449 3.630 8.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.170 5.170 3 C -0.058 4.058 4 C -0.364 4.364 5 C 0.080 3.920 6 N -0.348 5.348 7 C 0.210 3.790 8 H 0.040 0.960 9 C -0.633 4.633 10 H 0.055 0.945 11 C -0.215 4.215 12 N -0.558 5.558 13 Si 0.931 3.069 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.204 1.204 17 C -0.071 4.071 18 C -0.150 4.150 19 C -0.138 4.138 20 C -0.156 4.156 21 C -0.139 4.139 22 C -0.159 4.159 23 N -0.241 5.241 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.136 0.864 27 H 0.232 0.768 28 H 0.134 0.866 29 H 0.222 0.778 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.165 -3.234 2.726 8.320 hybrid contribution -0.254 -0.440 0.741 0.899 sum -7.418 -3.674 3.468 8.976 Atomic orbital electron populations 1.22071 0.71847 1.05648 1.04055 1.48284 1.07221 1.02372 1.59133 1.22799 0.89369 0.94871 0.98728 1.21145 0.98045 0.93480 1.23773 1.19551 0.87476 0.90961 0.94027 1.44254 1.01633 1.06035 1.82879 1.17394 0.77147 0.89876 0.94614 0.95969 1.22359 1.33218 1.15220 0.92547 0.94506 1.26916 0.93596 0.92702 1.08238 1.70886 1.42474 1.41568 1.00837 0.83026 0.76433 0.76600 0.70801 1.20196 1.20750 1.20420 1.20557 0.97853 0.95079 0.93607 1.20948 1.00529 0.93097 1.00464 1.21395 0.95221 1.00100 0.97067 1.21372 0.99884 0.95883 0.98455 1.21339 0.98306 0.93960 1.00291 1.21030 0.97690 0.99357 0.97813 1.77225 0.99474 1.08674 1.38773 0.90267 0.89708 0.86371 0.76806 0.86593 0.77820 0.92708 0.87181 0.83612 0.83030 0.84215 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.00 11.47 127.77 1.46 3.47 16 2 N -0.39 -12.76 4.01 -369.61 -1.48 -14.24 16 3 C 0.09 2.97 11.48 83.52 0.96 3.93 16 4 C -0.33 -14.68 9.92 22.12 0.22 -14.46 16 5 C 0.34 15.80 8.14 133.38 1.09 16.89 16 6 N -0.71 -33.79 5.22 -330.57 -1.73 -35.52 16 7 C 0.31 16.00 2.01 43.50 0.09 16.09 16 8 H 0.02 1.26 5.24 -2.39 -0.01 1.25 16 9 C -0.59 -33.29 8.51 25.60 0.22 -33.07 16 10 H 0.04 2.14 7.81 -2.91 -0.02 2.12 16 11 C -0.01 -0.76 5.46 84.66 0.46 -0.29 16 12 N -0.92 -53.90 13.63 21.45 0.29 -53.60 16 13 Si 1.11 50.97 29.90 68.60 2.05 53.02 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 C -0.07 -3.21 4.93 -19.87 -0.10 -3.31 16 18 C -0.13 -5.34 8.91 22.27 0.20 -5.14 16 19 C -0.12 -3.94 10.05 22.27 0.22 -3.71 16 20 C -0.14 -4.23 10.05 22.27 0.22 -4.01 16 21 C -0.12 -4.21 10.05 22.27 0.22 -3.99 16 22 C -0.14 -6.06 9.54 22.27 0.21 -5.85 16 23 N -0.41 -17.32 12.59 -54.54 -0.69 -18.00 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.22 4.66 8.06 -2.91 -0.02 4.64 16 28 H 0.12 5.73 7.45 -2.92 -0.02 5.71 16 29 H 0.39 17.32 7.41 -92.71 -0.69 16.63 16 30 H 0.26 15.36 5.83 -92.71 -0.54 14.82 16 31 H 0.11 4.39 7.35 -2.91 -0.02 4.36 16 32 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 33 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 34 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.10 4.49 7.40 -2.92 -0.02 4.46 16 Total: -1.00 -72.22 302.31 4.57 -67.65 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.64 Total: 34.17 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 5.48 Total: -33.48 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -3.60 Total: -121.37 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Total: -72.22 4.57 -67.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094196953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.448 kcal (2) G-P(sol) polarization free energy of solvation -72.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds